Measuring the effect of deoxycholate on Bacteroide... (ID 911175) - BioProject

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Accession: PRJNA911175 ID: 911175

Measuring the effect of deoxycholate on Bacteroides fragilis gene expression

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We used RNAseq as an approach to assess the B. fragilis strain p207 response to the bile salt, deoxycholic acid (DC). More...

Accession	PRJNA911175; GEO: GSE220692
Data Type	Transcriptome or Gene expression
Scope	Multiisolate
Organism	Bacteroides fragilis[Taxonomy ID: 817] Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides fragilis
Publications	Fiebig A et al., "Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient.", mBio, 2024 Jan 16;15(1):e0283023 Fiebig A et al., "Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient.", bioRxiv, 2023 Oct 17;
Grants	"Host and microbial basis of human ulcerative colitis and pouchitis: Identification, role, mechanisms, and resource development of host susceptibility and pathobiont factors" (Grant ID RC2 DK122394, National Institute of Diabetes and Digestive and Kidney Diseases)
Submission	Registration date: 12-Dec-2022 Dept. Microbiology and Molecular Genetics, Michigan State University
Relevance	Medical

Project Data:

Parameter	Value
Data volume, Supplementary Mbytes	1

Parameter	Value
Data volume, Gbases	9
Data volume, Mbytes	3294