ID 893328 - BioProject

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Accession: PRJEB56897 ID: 893328

EMG produced TPA metagenomics assembly of PRJNA841368 data set (C-section increases cecal abundance of the archetypal bile acid and glucocorticoid modifying Lachnoclostridium [Clostridium] scindens in mice).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA841368, and was assembled with metaSPAdes v3. More...

Accession	PRJEB56897
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 23-Oct-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1073
WGS master	95
Publications
PubMed	1
PMC	1
Other datasets
BioSample	95
Assembly	95

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

95
95

Assembly	WGS	BioSample	Taxonomy
GCA_947297475.1	CAMYTI000000000	SAMEA111557463	Bacteroides acidifaciens
GCA_947297165.1	CAMYRX000000000	SAMEA111557492	Cutibacterium acnes
GCA_947296855.1	CAMYRI000000000	SAMEA111557470	Mucispirillum schaedleri
GCA_947297445.1	CAMYTB000000000	SAMEA111557508	uncultured Alistipes sp.
GCA_947297295.1	CAMYSN000000000	SAMEA111557530	uncultured Anaerotruncus sp.
GCA_947296935.1	CAMYRC000000000	SAMEA111557454	uncultured Angelakisella sp.
GCA_947296835.1	CAMYQS000000000	SAMEA111557534	uncultured Atopostipes sp.
GCA_947296885.1	CAMYQQ000000000	SAMEA111557544	uncultured Bacteroidales bacterium
GCA_947296725.1	CAMYQH000000000	SAMEA111557526	uncultured Bacteroides sp.
GCA_947296975.1	CAMYQY000000000	SAMEA111557540	uncultured Candidatus Arthromitus sp.
GCA_947296925.1	CAMYQV000000000	SAMEA111557455	uncultured Candidatus Saccharibacteria bacterium
GCA_947297395.1	CAMYSQ000000000	SAMEA111557460	uncultured Clostridia bacterium
GCA_947297485.1	CAMYTG000000000	SAMEA111557501	uncultured Clostridia bacterium
GCA_947297465.1	CAMYTA000000000	SAMEA111557506	uncultured Clostridia bacterium
GCA_947297505.1	CAMYTD000000000	SAMEA111557465	uncultured Clostridia bacterium
GCA_947296645.1	CAMYQJ000000000	SAMEA111557531	uncultured Clostridia bacterium
GCA_947296965.1	CAMYQX000000000	SAMEA111557453	uncultured Clostridia bacterium
GCA_947297225.1	CAMYSF000000000	SAMEA111557481	uncultured Clostridia bacterium
GCA_947296955.1	CAMYRB000000000	SAMEA111557489	uncultured Clostridia bacterium
GCA_947297075.1	CAMYRQ000000000	SAMEA111557494	uncultured Clostridia bacterium
GCA_947297215.1	CAMYSD000000000	SAMEA111557496	uncultured Clostridia bacterium
GCA_947297515.1	CAMYTF000000000	SAMEA111557503	uncultured Clostridia bacterium
GCA_947296895.1	CAMYQR000000000	SAMEA111557542	uncultured Clostridia bacterium
GCA_947297045.1	CAMYRP000000000	SAMEA111557452	uncultured Clostridia bacterium
GCA_947297195.1	CAMYSB000000000	SAMEA111557483	uncultured Clostridia bacterium
GCA_947297455.1	CAMYTE000000000	SAMEA111557505	uncultured Clostridia bacterium
GCA_947296825.1	CAMYQM000000000	SAMEA111557459	uncultured Clostridia bacterium
GCA_947296735.1	CAMYQF000000000	SAMEA111557471	uncultured Clostridia bacterium
GCA_947297135.1	CAMYRW000000000	SAMEA111557476	uncultured Clostridia bacterium
GCA_947297155.1	CAMYRV000000000	SAMEA111557493	uncultured Clostridia bacterium
GCA_947297365.1	CAMYST000000000	SAMEA111557466	uncultured Clostridia bacterium
GCA_947296915.1	CAMYQW000000000	SAMEA111557488	uncultured Clostridia bacterium
GCA_947297035.1	CAMYRH000000000	SAMEA111557451	uncultured Clostridia bacterium
GCA_947296745.1	CAMYQC000000000	SAMEA111557521	uncultured Clostridia bacterium
GCA_947296805.1	CAMYQL000000000	SAMEA111557517	uncultured Clostridia bacterium
GCA_947296815.1	CAMYQZ000000000	SAMEA111557514	uncultured Clostridia bacterium
GCA_947296875.1	CAMYQO000000000	SAMEA111557541	uncultured Clostridia bacterium
GCA_947296685.1	CAMYQD000000000	SAMEA111557524	uncultured Clostridia bacterium
GCA_947297535.1	CAMYTJ000000000	SAMEA111557527	uncultured Clostridia bacterium
GCA_947297025.1	CAMYRJ000000000	SAMEA111557497	uncultured Clostridia bacterium
GCA_947297385.1	CAMYSR000000000	SAMEA111557504	uncultured Clostridia bacterium
GCA_947297565.1	CAMYTO000000000	SAMEA111557473	uncultured Clostridia bacterium
GCA_947297125.1	CAMYRU000000000	SAMEA111557511	uncultured Clostridia bacterium
GCA_947296665.1	CAMYQB000000000	SAMEA111557528	uncultured Clostridium sp.
GCA_947297335.1	CAMYSS000000000	SAMEA111557462	uncultured Clostridium sp.
GCA_947296845.1	CAMYRA000000000	SAMEA111557468	uncultured Clostridium sp.
GCA_947297575.1	CAMYTN000000000	SAMEA111557512	uncultured Dorea sp.
GCA_947297115.1	CAMYRZ000000000	SAMEA111557480	uncultured Eubacterium sp.
GCA_947297345.1	CAMYSV000000000	SAMEA111557498	uncultured Eubacterium sp.
GCA_947297265.1	CAMYSK000000000	SAMEA111557491	uncultured Eubacterium sp.
GCA_947297245.1	CAMYSE000000000	SAMEA111557485	uncultured Eubacterium sp.
GCA_947296795.1	CAMYQK000000000	SAMEA111557515	uncultured Firmicutes bacterium
GCA_947296715.1	CAMYQI000000000	SAMEA111557519	uncultured Firmicutes bacterium
GCA_947296765.1	CAMYQU000000000	SAMEA111557522	uncultured Lachnoclostridium sp.
GCA_947297235.1	CAMYSG000000000	SAMEA111557510	uncultured Lachnospiraceae bacterium
GCA_947297405.1	CAMYSX000000000	SAMEA111557467	uncultured Lachnospiraceae bacterium
GCA_947297055.1	CAMYRM000000000	SAMEA111557457	uncultured Lachnospiraceae bacterium
GCA_947297175.1	CAMYSA000000000	SAMEA111557477	uncultured Lachnospiraceae bacterium
GCA_947296705.1	CAMYQP000000000	SAMEA111557474	uncultured Lachnospiraceae bacterium
GCA_947297185.1	CAMYSC000000000	SAMEA111557490	uncultured Lachnospiraceae bacterium
GCA_947296635.1	CAMYPY000000000	SAMEA111557520	uncultured Lachnospiraceae bacterium
GCA_947297275.1	CAMYSI000000000	SAMEA111557487	uncultured Lachnospiraceae bacterium
GCA_947297435.1	CAMYTH000000000	SAMEA111557502	uncultured Lachnospiraceae bacterium
GCA_947297375.1	CAMYSY000000000	SAMEA111557500	uncultured Lachnospiraceae bacterium
GCA_947297145.1	CAMYRY000000000	SAMEA111557479	uncultured Lachnospiraceae bacterium
GCA_947297355.1	CAMYSZ000000000	SAMEA111557458	uncultured Lachnospiraceae bacterium
GCA_947296905.1	CAMYRO000000000	SAMEA111557543	uncultured Lachnospiraceae bacterium
GCA_947296695.1	CAMYQG000000000	SAMEA111557475	uncultured Lachnospiraceae bacterium
GCA_947297525.1	CAMYTK000000000	SAMEA111557532	uncultured Lachnospiraceae bacterium
GCA_947297315.1	CAMYSP000000000	SAMEA111557525	uncultured Lachnospiraceae bacterium
GCA_947296865.1	CAMYQT000000000	SAMEA111557469	uncultured Lachnospiraceae bacterium
GCA_947297015.1	CAMYRD000000000	SAMEA111557538	uncultured Lachnospiraceae bacterium
GCA_947296995.1	CAMYRK000000000	SAMEA111557456	uncultured Lachnospiraceae bacterium
GCA_947297085.1	CAMYRR000000000	SAMEA111557509	uncultured Lachnospiraceae bacterium
GCA_947297255.1	CAMYSJ000000000	SAMEA111557482	uncultured Lachnospiraceae bacterium
GCA_947297095.1	CAMYRT000000000	SAMEA111557484	uncultured Lachnospiraceae bacterium
GCA_947297285.1	CAMYSL000000000	SAMEA111557536	uncultured Lachnospiraceae bacterium
GCA_947297495.1	CAMYTC000000000	SAMEA111557499	uncultured Lactobacillus sp.
GCA_947296755.1	CAMYQE000000000	SAMEA111557533	uncultured Mollicutes bacterium
GCA_947297415.1	CAMYSU000000000	SAMEA111557461	uncultured Muribaculaceae bacterium
GCA_947296775.1	CAMYRF000000000	SAMEA111557516	uncultured Mycoplasmatota bacterium
GCA_947297325.1	CAMYSM000000000	SAMEA111557523	uncultured Mycoplasmatota bacterium
GCA_947297555.1	CAMYTM000000000	SAMEA111557518	uncultured Mycoplasmatota bacterium
GCA_947297205.1	CAMYSH000000000	SAMEA111557537	uncultured Oscillibacter sp.
GCA_947297425.1	CAMYSW000000000	SAMEA111557464	uncultured Porphyromonadaceae bacterium
GCA_947296675.1	CAMYQA000000000	SAMEA111557529	uncultured Porphyromonadaceae bacterium
GCA_947296655.1	CAMYPZ000000000	SAMEA111557535	uncultured Porphyromonadaceae bacterium
GCA_947297065.1	CAMYRN000000000	SAMEA111557478	uncultured Roseburia sp.
GCA_947297305.1	CAMYSO000000000	SAMEA111557472	uncultured Staphylococcus sp.
GCA_947297105.1	CAMYRS000000000	SAMEA111557495	uncultured Turicibacter sp.
GCA_947296985.1	CAMYRG000000000	SAMEA111557539	uncultured bacterium
GCA_947297545.1	CAMYTL000000000	SAMEA111557513	uncultured bacterium
GCA_947297005.1	CAMYRE000000000	SAMEA111557545	uncultured bacterium
GCA_947296945.1	CAMYRL000000000	SAMEA111557486	uncultured bacterium
GCA_947296785.1	CAMYQN000000000	SAMEA111557507	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJNA841368 data set (C-section increases cecal abundance of the archetypal bile acid and glucocorticoid modifying Lachnoclostridium [Clostridium] scindens in mice).

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