ID 886947 - BioProject

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Accession: PRJEB56431 ID: 886947

EMG produced TPA metagenomics assembly of PRJNA552294 data set (Subgingival metagenome of aggressive periodontitis).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA552294, and was assembled with metaSPAdes v3. More...

Accession	PRJEB56431
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 4-Oct-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4670
WGS master	56
Publications
PubMed	1
PMC	1
Other datasets
BioSample	56
Assembly	56

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

56
56

Assembly	WGS	BioSample	Taxonomy
GCA_963514365.1	CAUPUX000000000	SAMEA114443889	Actinomyces oris
GCA_963514405.1	CAUPTA000000000	SAMEA114443893	Aggregatibacter actinomycetemcomitans
GCA_963514415.1	CAUPUO000000000	SAMEA114443897	Aggregatibacter segnis
GCA_963514395.1	CAUPUI000000000	SAMEA114443891	Alloprevotella tannerae
GCA_963514185.1	CAUPUP000000000	SAMEA114443911	Corynebacterium matruchotii
GCA_963514465.1	CAUPUR000000000	SAMEA114443881	Desulfobulbus oralis
GCA_963514735.1	CAUPUU000000000	SAMEA114443883	Filifactor alocis
GCA_963514745.1	CAUPVI000000000	SAMEA114443896	Fusobacterium nucleatum
GCA_963514705.1	CAUPUY000000000	SAMEA114443900	Fusobacterium nucleatum
GCA_963514675.1	CAUPUW000000000	SAMEA114443878	Fusobacterium nucleatum
GCA_963514345.1	CAUPTT000000000	SAMEA114443873	Mogibacterium timidum
GCA_963514145.1	CAUPUL000000000	SAMEA114443913	Neisseria elongata
GCA_963514575.1	CAUPTP000000000	SAMEA114443874	Peptostreptococcus stomatis
GCA_963514505.1	CAUPTW000000000	SAMEA114443899	Porphyromonas catoniae
GCA_963514665.1	CAUPTJ000000000	SAMEA114443876	Porphyromonas endodontalis
GCA_963514275.1	CAUPTN000000000	SAMEA114443906	Porphyromonas gingivalis
GCA_963514455.1	CAUPTU000000000	SAMEA114443916	Prevotella intermedia
GCA_963514765.1	CAUPVJ000000000	SAMEA114443870	Rothia dentocariosa
GCA_963514605.1	CAUPTK000000000	SAMEA114443872	Streptococcus oralis
GCA_963514195.1	CAUPUM000000000	SAMEA114443871	Streptococcus sanguinis
GCA_963514485.1	CAUPTG000000000	SAMEA114443902	Tannerella forsythia
GCA_963514305.1	CAUPTF000000000	SAMEA114443910	Veillonella parvula
GCA_963514555.1	CAUPUA000000000	SAMEA114443895	[Eubacterium] brachy
GCA_963514385.1	CAUPTH000000000	SAMEA114443879	[Eubacterium] nodatum
GCA_963514545.1	CAUPTQ000000000	SAMEA114443865	[Eubacterium] saphenum
GCA_963514825.1	CAUPWB000000000	SAMEA114443863	uncultured Actinomyces sp.
GCA_963514225.1	CAUPVG000000000	SAMEA114443907	uncultured Actinomyces sp.
GCA_963514375.1	CAUPUE000000000	SAMEA114443904	uncultured Bacteroidales bacterium
GCA_963514325.1	CAUPTI000000000	SAMEA114443915	uncultured Bacteroidetes bacterium
GCA_963514435.1	CAUPTS000000000	SAMEA114443903	uncultured Bacteroidia bacterium
GCA_963514725.1	CAUPVA000000000	SAMEA114443894	uncultured Bacteroidia bacterium
GCA_963514515.1	CAUPSY000000000	SAMEA114443892	uncultured Candidatus Saccharibacteria bacterium
GCA_963514755.1	CAUPUV000000000	SAMEA114443875	uncultured Candidatus Saccharibacteria bacterium
GCA_963514595.1	CAUPUG000000000	SAMEA114443868	uncultured Candidatus Saccharibacteria bacterium
GCA_963514625.1	CAUPTB000000000	SAMEA114443886	uncultured Candidatus Saccharibacteria bacterium
GCA_963514175.1	CAUPTC000000000	SAMEA114443908	uncultured Candidatus Saccharibacteria bacterium
GCA_963514335.1	CAUPSZ000000000	SAMEA114443909	uncultured Candidatus Saccharibacteria bacterium
GCA_963514695.1	CAUPUQ000000000	SAMEA114443901	uncultured Candidatus Saccharibacteria bacterium
GCA_963514815.1	CAUPVZ000000000	SAMEA114443917	uncultured Desulfovibrio sp.
GCA_963514685.1	CAUPVE000000000	SAMEA114443882	uncultured Eggerthellaceae bacterium
GCA_963514715.1	CAUPVF000000000	SAMEA114443887	uncultured Eubacteriales bacterium
GCA_963514445.1	CAUPTM000000000	SAMEA114443888	uncultured Firmicutes bacterium
GCA_963514535.1	CAUPUB000000000	SAMEA114443866	uncultured Fretibacterium sp.
GCA_963514955.1	CAUPWC000000000	SAMEA114443918	uncultured Fretibacterium sp.
GCA_963514475.1	CAUPVB000000000	SAMEA114443877	uncultured Lachnospiraceae bacterium
GCA_963514805.1	CAUPVP000000000	SAMEA114443864	uncultured Neisseria sp.
GCA_963514295.1	CAUPTO000000000	SAMEA114443869	uncultured Neisseria sp.
GCA_963514565.1	CAUPTV000000000	SAMEA114443885	uncultured Peptoniphilaceae bacterium
GCA_963514645.1	CAUPTY000000000	SAMEA114443898	uncultured Porphyromonas sp.
GCA_963514635.1	CAUPVH000000000	SAMEA114443890	uncultured Prevotella sp.
GCA_963514155.1	CAUPUF000000000	SAMEA114443912	uncultured Prevotella sp.
GCA_963514585.1	CAUPUZ000000000	SAMEA114443880	uncultured Selenomonas sp.
GCA_963514525.1	CAUPUS000000000	SAMEA114443914	uncultured Tannerella sp.
GCA_963514785.1	CAUPVX000000000	SAMEA114443905	uncultured Treponema sp.
GCA_963514615.1	CAUPUT000000000	SAMEA114443867	uncultured Treponema sp.
GCA_963514655.1	CAUPVC000000000	SAMEA114443884	uncultured Treponema sp.

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EMG produced TPA metagenomics assembly of PRJNA552294 data set (Subgingival metagenome of aggressive periodontitis).

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