ID 863218 - BioProject

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Accession: PRJEB55049 ID: 863218

EMG produced TPA metagenomics assembly of PRJNA631294 data set (Putative amylases in the human vagina).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA631294, and was assembled with metaSPAdes v3. More...

Accession	PRJEB55049
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 28-Jul-2022 EMG
Locus Tag Prefix	QDN64

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	249
WGS master	8
Publications
PubMed	1
PMC	1
Other datasets
BioSample	8
Assembly	8

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

8
8

Assembly	WGS	BioSample	Taxonomy
GCA_947041305.1	CAMRDB000000000	SAMEA111428926	Gardnerella vaginalis
GCA_947041205.1	CAMRDK000000000	SAMEA111428925	Lactobacillus crispatus
GCA_947036445.1	CAMQQW000000000	SAMEA111428929	Lactobacillus gasseri
GCA_947036365.1	CAMQQL000000000	SAMEA111428928	Lactobacillus iners
GCA_947036435.1	CAMQQY000000000	SAMEA111428922	Lactobacillus jensenii
GCA_947036385.1	CAMQQM000000000	SAMEA111428927	Ureaplasma parvum
GCA_947041215.1	CAMRDA000000000	SAMEA111428923	uncultured Atopobium sp.
GCA_947036875.1	CAMQSC000000000	SAMEA111428924	uncultured Bifidobacteriaceae bacterium

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EMG produced TPA metagenomics assembly of PRJNA631294 data set (Putative amylases in the human vagina).

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