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Accession: PRJNA842647 ID: 842647

Next-generation sequencing of NDM-producing Gram-negative bacteria

Epidemiological study of NDM-producing Gram-negative bacteria from broiler farms in Eastern China
AccessionPRJNA842647
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsHe W et al., "Persistence and molecular epidemiology of bla(NDM)-positive Gram-negative bacteria in three broiler farms: A longitudinal study (2015-2021).", J Hazard Mater, 2023 Mar 15;446:130725
SubmissionRegistration date: 26-May-2022
South China Agricultural University
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)284
Publications
PubMed1
Other datasets
BioSample284
Assembly284
Assembly details:
Assembly levelNumber of Assemblies
15
269
284
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_030192985.1ContigJANGOD000000000SAMN28688502
AHM8C46I
GCA_030192735.1ContigJANGNP000000000SAMN28688516
AHM8C70AI
GCA_030194195.1ContigJANGPQ000000000SAMN28689358
AHM20C123HI
GCA_030194145.1ContigJANGPO000000000SAMN28689360
AHM20C145ZI
GCA_030194135.1ContigJANGPP000000000SAMN28689359
AHM20C124ZI
GCA_030193975.1ContigJANGPH000000000SAMN28689367
AHM20C164ZI
GCA_030193495.1ContigJANGSM000000000SAMN28688493
AHM8C24AI
GCA_030190415.1ContigJANGSL000000000SAMN28688205
AHM7C2I
GCA_030190075.1ContigJANGSK000000000SAMN28688220
AHM7C24I
GCA_030194215.1ContigJANGSP000000000SAMN28689356
AHM20C117I
GCA_030188875.1ScaffoldJAMSIF000000000SAMN28679666
AHM5C62
GCA_030190195.1ContigJANGIQ000000000SAMN28688217
AHM7C16I
GCA_030190175.1ContigJANGIP000000000SAMN28688218
AHM7C20I
GCA_030190155.1ContigJANGIO000000000SAMN28688219
AHM7C21I
GCA_030190125.1ContigJANGIM000000000SAMN28688222
AHM7C31I
GCA_030190105.1ContigJANGIF000000000SAMN28688229
AHM7C45I
GCA_030190095.1ContigJANGIL000000000SAMN28688223
AHM7C33-2I
GCA_030188175.1ContigJANGIW000000000SAMN28688211
AHM7C9I
GCA_030190295.1ContigJANGIV000000000SAMN28688212
AHM7C10I
GCA_030188115.1ContigJANGIN000000000SAMN28688221
AHM7C27I
GCA_030188105.1ContigJANGHR000000000SAMN28688243
AHM7C68I
GCA_030188095.1ContigJANGGH000000000SAMN28688279
AHM7C124I
GCA_030188075.1ContigJANGGG000000000SAMN28688280
AHM7C125I
GCA_030188055.1ContigJANGGD000000000SAMN28688283
AHM7C128I
GCA_030188035.1ContigJANGGC000000000SAMN28688284
AHM7C129I
GCA_030188015.1ScaffoldJAMSID000000000SAMN28679664
AHM5C23
GCA_030187995.1ContigJANGFZ000000000SAMN28688287
AHM7C132I
GCA_030187975.1ContigJANGFY000000000SAMN28688288
AHM7C133I
GCA_030187955.1ScaffoldJAMSIC000000000SAMN28679663
AHM5C7
GCA_030187935.1ContigJAMSIB000000000SAMN28679662
AHM5C6
GCA_030187915.1ScaffoldJAMSIG000000000SAMN28679667
AHM5C66
GCA_030187895.1ScaffoldJAMSIH000000000SAMN28679668
AHM6C11
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AHM6C71
GCA_030187835.1ContigJAMSIJ000000000SAMN28679670
AHM6C70
GCA_030187845.1ScaffoldJAMSII000000000SAMN28679669
AHM6C65
GCA_030187815.1ScaffoldJAMSIL000000000SAMN28679672
AHM6C78
GCA_030187795.1ScaffoldJAMSIM000000000SAMN28679673
AHM6C87
GCA_030187755.1ScaffoldJAMSIN000000000SAMN28679674
AHM6C88
GCA_030187715.1ScaffoldJAMSIO000000000SAMN28679675
AHM6C95
GCA_030187735.1ScaffoldJAMSIP000000000SAMN28679676
AHM6C99
GCA_030187695.1ContigJAMSIQ000000000SAMN28679677
AHM6C101
GCA_030187675.1ContigJAMSIR000000000SAMN28679678
AHM6C102
GCA_030188205.1ContigJANGJG000000000SAMN28688629
AHM8C350WI
GCA_030190055.1ContigJANGIK000000000SAMN28688224
AHM7C35I
GCA_030190035.1ContigJANGIJ000000000SAMN28688225
AHM7C37I
GCA_030190015.1ContigJANGII000000000SAMN28688226
AHM7C39I
GCA_030189985.1ContigJANGIH000000000SAMN28688227
AHM7C41I
GCA_030189975.1ContigJANGIG000000000SAMN28688228
AHM7C43I
GCA_030189955.1ContigJANGIE000000000SAMN28688230
AHM7C52I
GCA_030189935.1ContigJANGID000000000SAMN28688231
AHM7C54I
GCA_030189905.1ContigJANGIB000000000SAMN28688233
AHM7C56I
GCA_030189895.1ContigJANGIC000000000SAMN28688232
AHM7C55I
GCA_030189865.1ContigJANGIA000000000SAMN28688234
AHM7C57I
GCA_030190365.1ContigJANGIY000000000SAMN28688209
AHM7C7I
GCA_030190355.1ContigJANGIZ000000000SAMN28688208
AHM7C5I
GCA_030190335.1ContigJANGJA000000000SAMN28688207
AHM7C4I
GCA_030190255.1ContigJANGIT000000000SAMN28688214
AHM7C13I
GCA_030192775.1ContigJANGNR000000000SAMN28688514
AHM8C6I-2
GCA_030192745.1ContigJANGNQ000000000SAMN28688515
AHM8C6I-3
GCA_030190445.1ContigJANGJC000000000SAMN28688633
AHM8C364WI
GCA_030190435.1ContigJANGJF000000000SAMN28688630
AHM8C352RI
GCA_030190615.1ContigJANGJN000000000SAMN28688622
AHM8C292RI
GCA_030190625.1ContigJANGJO000000000SAMN28688621
AHM8C287BI
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AHM8C346WI
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AHM8C343WI
GCA_030190535.1ContigJANGJE000000000SAMN28688631
AHM8C356RI
GCA_030189835.1ContigJANGHX000000000SAMN28688237
AHM7C60I
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AHM7C59I
GCA_030189815.1ContigJANGHU000000000SAMN28688240
AHM7C63I
GCA_030189765.1ContigJANGHW000000000SAMN28688238
AHM7C61I
GCA_030189755.1ContigJANGHV000000000SAMN28688239
AHM7C62I
GCA_030189735.1ContigJANGHT000000000SAMN28688241
AHM7C64I
GCA_030189715.1ContigJANGHS000000000SAMN28688242
AHM7C66I
GCA_030189695.1ContigJANGHQ000000000SAMN28688244
AHM7C69I
GCA_030189645.1ContigJANGHP000000000SAMN28688245
AHM7C73I
GCA_030189675.1ContigJANGHO000000000SAMN28688246
AHM7C75I
GCA_030189625.1ContigJANGHN000000000SAMN28688247
AHM7C79I
GCA_030189615.1ContigJANGHM000000000SAMN28688248
AHM7C80I
GCA_030189595.1ContigJANGHL000000000SAMN28688249
AHM7C82I
GCA_030189575.1ContigJANGHK000000000SAMN28688250
AHM7C83I
GCA_030189555.1ContigJANGHJ000000000SAMN28688251
AHM7C84I
GCA_030189515.1ContigJANGHI000000000SAMN28688252
AHM7C85I
GCA_030189525.1ContigJANGHH000000000SAMN28688253
AHM7C86I
GCA_030189495.1ContigJANGHG000000000SAMN28688254
AHM7C87I
GCA_030189455.1ContigJANGHF000000000SAMN28688255
AHM7C88I
GCA_030189445.1ContigJANGHD000000000SAMN28688257
AHM7C95I
GCA_030189415.1ContigJANGHE000000000SAMN28688256
AHM7C89I
GCA_030189425.1ContigJANGGZ000000000SAMN28688261
AHM7C104I
GCA_030189395.1ContigJANGHC000000000SAMN28688258
AHM7C97I
GCA_030189375.1ContigJANGHB000000000SAMN28688259
AHM7C99I
GCA_030189355.1ContigJANGHA000000000SAMN28688260
AHM7C101I
GCA_030189335.1ContigJANGGY000000000SAMN28688262
AHM7C105I
GCA_030189305.1ContigJANGGX000000000SAMN28688263
AHM7C106I
GCA_030189295.1ContigJANGGW000000000SAMN28688264
AHM7C107I
GCA_030189275.1ContigJANGGV000000000SAMN28688265
AHM7C108I
GCA_030189245.1ContigJANGGU000000000SAMN28688266
AHM7C109I
GCA_030189225.1ContigJANGGT000000000SAMN28688267
AHM7C110I
GCA_030189215.1ContigJANGGR000000000SAMN28688269
AHM7C112I
GCA_030189175.1ContigJANGGQ000000000SAMN28688270
AHM7C113I
GCA_030189185.1ContigJANGGS000000000SAMN28688268
AHM7C111I
GCA_030189145.1ContigJANGGO000000000SAMN28688272
AHM7C115I
GCA_030189135.1ContigJANGGP000000000SAMN28688271
AHM7C114I
GCA_030189105.1ContigJANGGM000000000SAMN28688274
AHM7C118I
GCA_030189095.1ContigJANGGN000000000SAMN28688273
AHM7C117I
GCA_030189075.1ContigJANGGL000000000SAMN28688275
AHM7C119I
GCA_030189055.1ContigJAMSIA000000000SAMN28679661
AHM5C2
GCA_030189035.1ContigJANGGK000000000SAMN28688276
AHM7C120I
GCA_030189005.1ContigJANGGJ000000000SAMN28688277
AHM7C122I
GCA_030188995.1ContigJANGGI000000000SAMN28688278
AHM7C123I
GCA_030188975.1ContigJANGGF000000000SAMN28688281
AHM7C126I
GCA_030188955.1ContigJANGGE000000000SAMN28688282
AHM7C127I
GCA_030188925.1ScaffoldJAMSIE000000000SAMN28679665
AHM5C40
GCA_030188905.1ContigJANGGA000000000SAMN28688286
AHM7C131I
GCA_030188895.1ContigJANGGB000000000SAMN28688285
AHM7C130I
GCA_030194255.1ContigJANGPV000000000SAMN28689352
AHM20C113I
GCA_030194265.1ContigJANGPS000000000SAMN28689355
AHM20C116ZI
GCA_030194235.1ContigJANGPT000000000SAMN28689354
AHM20C115ZI
GCA_030194115.1ContigJANGPN000000000SAMN28689361
AHM20C86ZI
GCA_030194095.1ContigJANGPL000000000SAMN28689363
AHM20C89ZI
GCA_030193955.1ContigJANGPE000000000SAMN28689370
AHM20C230ZI
GCA_030193935.1ContigJANGPF000000000SAMN28689369
AHM20C229I
GCA_030193915.1ContigJANGPD000000000SAMN28689371
AHM20C232ZI
GCA_030193895.1ContigJANGOY000000000SAMN28688479
AHM8C130AI
GCA_030193875.1ContigJANGPC000000000SAMN28689372
AHM8C166RI
GCA_030193845.1ContigJANGPB000000000SAMN28688475
AHM8C123-2I
GCA_030193835.1ContigJANGPA000000000SAMN28688476
AHM8C127BI
GCA_030193815.1ContigJANGOZ000000000SAMN28688477
AHM8C12AI
GCA_030194035.1ContigJANGPI000000000SAMN28689366
AHM20C93ZI
GCA_030194015.1ContigJANGPJ000000000SAMN28689365
AHM20C91ZI
GCA_030193735.1ContigJANGOW000000000SAMN28688482
AHM8C133-2I
GCA_030193715.1ContigJANGOU000000000SAMN28688484
AHM8C137-2I
GCA_030193695.1ContigJANGOV000000000SAMN28688483
AHM8C135-2I
GCA_030193675.1ContigJANGON000000000SAMN28688491
AHM8C17AI
GCA_030194335.1ContigJANGPX000000000SAMN28689350
AHM20C101ZI
GCA_030193475.1ContigJANGOK000000000SAMN28688495
AHM8C27I
GCA_030193775.1ContigJANGOX000000000SAMN28688481
AHM8C133-1I
GCA_030193635.1ContigJANGOS000000000SAMN28688486
AHM8C145-1I
GCA_030193595.1ContigJANGOQ000000000SAMN28688488
AHM8C15I
GCA_030193605.1ContigJANGOR000000000SAMN28688487
AHM8C146-2I
GCA_030193575.1ContigJANGOP000000000SAMN28688489
AHM8C16-1I
GCA_030193555.1ContigJANGOO000000000SAMN28688490
AHM8C16-2I
GCA_030193525.1ContigJANGOL000000000SAMN28688494
AHM8C26I
GCA_030193515.1ContigJANGOM000000000SAMN28688492
AHM8C21I
GCA_030193415.1ContigJANGOF000000000SAMN28688500
AHM8C39I
GCA_030193085.1ContigJANGOJ000000000SAMN28688496
AHM8C28I
GCA_030193065.1ContigJANGOG000000000SAMN28688499
AHM8C34I
GCA_030193055.1ContigJANGOI000000000SAMN28688497
AHM8C29I
GCA_030193035.1ContigJANGOE000000000SAMN28688501
AHM8C3I
GCA_030193005.1ContigJANGOC000000000SAMN28688503
AHM8C47I
GCA_030192715.1ContigJANGNO000000000SAMN28688517
AHM8C71BI
GCA_030192695.1ContigJANGNN000000000SAMN28688518
AHM8C76I
GCA_030192675.1ContigJANGNM000000000SAMN28688519
AHM8C7I
GCA_030192655.1ContigJANGNL000000000SAMN28688520
AHM8C8I
GCA_030192635.1ContigJANGNK000000000SAMN28688521
AHM8C150RI
GCA_030192615.1ContigJANGNJ000000000SAMN28688522
AHM8C151RI
GCA_030192595.1ContigJANGNH000000000SAMN28688524
AHM8C156RI
GCA_030192575.1ContigJANGNI000000000SAMN28688523
AHM8C153RI
GCA_030192555.1ContigJANGNG000000000SAMN28688525
AHM8C157RI
GCA_030192535.1ContigJANGMZ000000000SAMN28688532
AHM8C165WI
GCA_030192515.1ContigJANGNF000000000SAMN28688526
AHM8C160RI
GCA_030192975.1ContigJANGOB000000000SAMN28688504
AHM8C49BI
GCA_030192955.1ContigJANGOA000000000SAMN28688505
AHM8C4I
GCA_030192935.1ContigJANGNZ000000000SAMN28688506
AHM8C50AI
GCA_030192905.1ContigJANGNY000000000SAMN28688507
AHM8C52AI
GCA_030192875.1ContigJANGNX000000000SAMN28688508
AHM8C58I
GCA_030192855.1ContigJANGNV000000000SAMN28688510
AHM8C60I
GCA_030192835.1ContigJANGNU000000000SAMN28688511
AHM8C65I
GCA_030192815.1ContigJANGNT000000000SAMN28688512
AHM8C66I
GCA_030192475.1ContigJANGND000000000SAMN28688528
AHM8C161RI
GCA_030192455.1ContigJANGNC000000000SAMN28688529
AHM8C163RI
GCA_030192435.1ContigJANGNB000000000SAMN28688530
AHM8C164BI
GCA_030192415.1ContigJANGMY000000000SAMN28688533
AHM8C167RI
GCA_030192375.1ContigJANGMX000000000SAMN28688534
AHM8C169RI
GCA_030192355.1ContigJANGMW000000000SAMN28688535
AHM8C173RI
GCA_030192335.1ContigJANGMV000000000SAMN28688536
AHM8C174RI
GCA_030192305.1ContigJANGMT000000000SAMN28688538
AHM8C176RI
GCA_030192285.1ContigJANGMU000000000SAMN28688537
AHM8C175RI
GCA_030192275.1ContigJANGMS000000000SAMN28688539
AHM8C178RI
GCA_030192235.1ContigJANGMQ000000000SAMN28688541
AHM8C180RI
GCA_030192245.1ContigJANGMR000000000SAMN28688540
AHM8C179RI
GCA_030192215.1ContigJANGMP000000000SAMN28688542
AHM8C181RI
GCA_030192185.1ContigJANGMO000000000SAMN28688543
AHM8C183RI
GCA_030192175.1ContigJANGMN000000000SAMN28688544
AHM8C184RI
GCA_030192115.1ContigJANGML000000000SAMN28688546
AHM8C188RI
GCA_030192125.1ContigJANGMM000000000SAMN28688545
AHM8C186RI
GCA_030192095.1ContigJANGMJ000000000SAMN28688548
AHM8C189RI
GCA_030192075.1ContigJANGMI000000000SAMN28688549
AHM8C191RI
GCA_030192055.1ContigJANGMH000000000SAMN28688550
AHM8C193RI
GCA_030192035.1ContigJANGMF000000000SAMN28688552
AHM8C200RI
GCA_030192015.1ContigJANGMG000000000SAMN28688551
AHM8C195RI
GCA_030191995.1ContigJANGME000000000SAMN28688553
AHM8C203RI
GCA_030191975.1ContigJANGMD000000000SAMN28688554
AHM8C204RI
GCA_030191955.1ContigJANGMC000000000SAMN28688555
AHM8C207RI
GCA_030191925.1ContigJANGMB000000000SAMN28688556
AHM8C208RI
GCA_030191915.1ContigJANGLZ000000000SAMN28688558
AHM8C211RI
GCA_030191895.1ContigJANGMA000000000SAMN28688557
AHM8C209RI
GCA_030191875.1ContigJANGLX000000000SAMN28688560
AHM8C213RI
GCA_030191855.1ContigJANGLY000000000SAMN28688559
AHM8C212RI
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AHM8C217RI
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AHM8C216RI
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AHM8C218RI
GCA_030191775.1ContigJANGLS000000000SAMN28688565
AHM8C219RI
GCA_030191755.1ContigJANGLT000000000SAMN28688564
AHM8C218-2RI
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AHM8C220RI
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AHM8C222RI
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AHM8C223RI
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AHM8C224RI
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AHM8C225RI
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AHM8C226RI
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AHM8C227RI
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AHM8C228RI
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AHM8C229RI
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AHM8C233RI
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AHM8C234RI
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AHM8C235RI
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AHM8C236RI
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AHM8C237RI
GCA_030191395.1ContigJANGLA000000000SAMN28688583
AHM8C238RI
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AHM8C240RI
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AHM8C239RI
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AHM8C241RI
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AHM8C242RI
GCA_030191295.1ContigJANGKV000000000SAMN28688588
AHM8C243RI
GCA_030191265.1ContigJANGKT000000000SAMN28688590
AHM8C245RI
GCA_030191245.1ContigJANGKQ000000000SAMN28688593
AHM8C248RI
GCA_030191235.1ContigJANGKU000000000SAMN28688589
AHM8C244RI
GCA_030191205.1ContigJANGKS000000000SAMN28688591
AHM8C246RI
GCA_030191195.1ContigJANGKR000000000SAMN28688592
AHM8C247RI
GCA_030191175.1ContigJANGKL000000000SAMN28688598
AHM8C253RI
GCA_030191115.1ContigJANGKM000000000SAMN28688597
AHM8C252RI
GCA_030191125.1ContigJANGKP000000000SAMN28688594
AHM8C249RI
GCA_030191105.1ContigJANGKO000000000SAMN28688595
AHM8C250RI
GCA_030191095.1ContigJANGKN000000000SAMN28688596
AHM8C251RI
GCA_030191075.1ContigJANGKK000000000SAMN28688599
AHM8C254RI
GCA_030191025.1ContigJANGKJ000000000SAMN28688600
AHM8C255RI
GCA_030191045.1ContigJANGKI000000000SAMN28688601
AHM8C256RI
GCA_030191015.1ContigJANGKF000000000SAMN28688604
AHM8C259RI
GCA_030190975.1ContigJANGKG000000000SAMN28688603
AHM8C258RI
GCA_030190985.1ContigJANGKH000000000SAMN28688602
AHM8C257RI
GCA_030190945.1ContigJANGKD000000000SAMN28688606
AHM8C261RI
GCA_030190935.1ContigJANGKE000000000SAMN28688605
AHM8C260RI
GCA_030190915.1ContigJANGKC000000000SAMN28688607
AHM8C262RI
GCA_030190895.1ContigJANGKB000000000SAMN28688608
AHM8C263RI
GCA_030190875.1ContigJANGKA000000000SAMN28688609
AHM8C264RI
GCA_030190855.1ContigJANGJY000000000SAMN28688611
AHM8C266RI
GCA_030190825.1ContigJANGJZ000000000SAMN28688610
AHM8C265WI
GCA_030190815.1ContigJANGJX000000000SAMN28688612
AHM8C267RI
GCA_030190795.1ContigJANGJW000000000SAMN28688613
AHM8C276RI
GCA_030190775.1ContigJANGJV000000000SAMN28688614
AHM8C277RI
GCA_030190725.1ContigJANGJT000000000SAMN28688616
AHM8C280RI
GCA_030190715.1ContigJANGJS000000000SAMN28688617
AHM8C281RI
GCA_030190705.1ContigJANGJU000000000SAMN28688615
AHM8C278RI
GCA_030190695.1ContigJANGJR000000000SAMN28688618
AHM8C282RI
GCA_030194305.1ContigJANGPU000000000SAMN28689353
AHM20C115I
GCA_030194055.1ContigJANGPM000000000SAMN28689362
AHM20C89I
GCA_030193795.1ContigJANGSO000000000SAMN28688478
AHM8C130-1I
GCA_030193755.1ContigJANGSN000000000SAMN28688480
AHM8C132-2I
GCA_030193095.1ContigJANGOH000000000SAMN28688498
AHM8C2I-1
GCA_030192155.1ContigJANGMK000000000SAMN28688547
AHM8C189BI
GCA_030192385.1ContigJANGNA000000000SAMN28688531
AHM8C165RI
GCA_030192785.1ContigJANGNS000000000SAMN28688513
AHM8C6I-1
GCA_030192895.1ContigJANGNW000000000SAMN28688509
AHM8C58-2I
GCA_030192485.1ContigJANGNE000000000SAMN28688527
AHM8C161BI
GCA_030194065.1ContigJANGPK000000000SAMN28689364
AHM20C90I
GCA_030194295.1ContigJANGPW000000000SAMN28689351
AHM20C109I
GCA_030190265.1ContigJANGIU000000000SAMN28688213
AHM7C12I
GCA_030190515.1ContigJANGJH000000000SAMN28688628
AHM8C350BI
GCA_030190495.1ContigJANGJJ000000000SAMN28688626
AHM8C348BI
GCA_030190475.1ContigJANGJI000000000SAMN28688627
AHM8C349BI
GCA_030190555.1ContigJANGJK000000000SAMN28688625
AHM8C347BI
GCA_030190395.1ContigJANGJB000000000SAMN28688206
AHM7C3I
GCA_030190225.1ContigJANGIR000000000SAMN28688216
AHM7C15I
GCA_030190215.1ContigJANGIS000000000SAMN28688215
AHM7C14I
GCA_030190315.1ScaffoldJANGIX000000000SAMN28688210
AHM7C8I
GCA_030189855.1ScaffoldJANGHZ000000000SAMN28688235
AHM7C58I
GCA_030188155.1ContigJANGJD000000000SAMN28688632
AHM8C356WI
GCA_030194175.1ContigJANGPR000000000SAMN28689357
AHM20C120I
GCA_030193985.1ContigJANGPG000000000SAMN28689368
AHM20C203I
GCA_030193655.1ContigJANGOT000000000SAMN28688485
AHM8C13I
GCA_030190675.1ContigJANGJQ000000000SAMN28688619
AHM8C284BI
GCA_030190655.1ContigJANGJP000000000SAMN28688620
AHM8C285BI

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