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Accession: PRJNA818364 ID: 818364

wetland metagenome

Prado Wetlands Open-Water Wetland Biomat Metagenomes, Metatranscriptomes, and Amplicon Sequences

The purpose of this work is to understand the microbial metabolisms contributing to contaminant attenuation and greenhouse gas emissions within a benthic biomat that colonizes open water engineered wetlands in the Prado Wetlands complex.
AccessionPRJNA818364
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismwetland metagenome[Taxonomy ID: 1325974]
unclassified sequences; metagenomes; ecological metagenomes; wetland metagenome
Publications
  • Published online: Vega M et al., "Pharmaceutical Biotransformation is Influenced by Photosynthesis and Microbial Nitrogen Cycling in a Benthic Wetland Biomat", Environmental Science & Technology, 2022;56(20):14462-14477
  • Published online: Vega M et al., "Methane-Oxidizing Activity Enhances Sulfamethoxazole Biotransformation in a Benthic Constructed Wetland Biomat", Environmental Science & Technology, 2023;57(18):7240-7253
Grants
  • "Engineering Research Center for Re-Inventing America's Urban Water Infrastructure" (Grant ID EEC-1028968, National Science Foundation)
  • "Hydrodynamic-enhancement of nitrate attenuation by integrating reactive biobarriers into shallow, open water treatment wetlands" (Grant ID G-62991-01, National Insitutes for Water Resources and U.S. Geological Survey)
SubmissionRegistration date: 28-Sep-2022
NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure
- Colorado School of Mines
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)252
SRA Experiments140
Other datasets
BioSample339
Assembly252
Assembly details:
Assembly levelNumber of Assemblies
142
110
252
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_025458825.1ScaffoldJALORR000000000SAMN27108645
Prado186
GCA_025456085.1ScaffoldJALOLF000000000SAMN27108477
Prado018
GCA_025456045.1ScaffoldJALOLJ000000000SAMN27108481
Prado022
GCA_025455885.1ScaffoldJALOLR000000000SAMN27108489
Prado030
GCA_025456165.1ScaffoldJALOLI000000000SAMN27108480
Prado021
GCA_025456205.1ContigJALOLA000000000SAMN27108472
Prado013
GCA_025456175.1ContigJALOLC000000000SAMN27108474
Prado015
GCA_025456365.1ContigJALOKT000000000SAMN27108465
Prado006
GCA_025456325.1ScaffoldJALOKV000000000SAMN27108467
Prado008
GCA_025456285.1ScaffoldJALOKY000000000SAMN27108470
Prado011
GCA_025456445.1ScaffoldJALOKQ000000000SAMN27108462
Prado003
GCA_025456425.1ScaffoldJALOKP000000000SAMN27108461
Prado002
GCA_025455945.1ContigJALOLN000000000SAMN27108485
Prado026
GCA_025457805.1ScaffoldJALOTR000000000SAMN27108697
Prado238
GCA_025457765.1ScaffoldJALOTX000000000SAMN27108703
Prado244
GCA_025457695.1ScaffoldJALOTW000000000SAMN27108702
Prado243
GCA_025457665.1ContigJALOTY000000000SAMN27108704
Prado245
GCA_025457625.1ContigJALOUA000000000SAMN27108706
Prado247
GCA_025455275.1ContigJALOMV000000000SAMN27108519
Prado060
GCA_025455725.1ContigJALOLY000000000SAMN27108496
Prado037
GCA_025454725.1ContigJALONW000000000SAMN27108546
Prado087
GCA_025454715.1ContigJALONY000000000SAMN27108548
Prado089
GCA_025454675.1ScaffoldJALONZ000000000SAMN27108549
Prado090
GCA_025454635.1ContigJALOOB000000000SAMN27108551
Prado092
GCA_025454565.1ScaffoldJALOOE000000000SAMN27108554
Prado095
GCA_025454525.1ContigJALOOG000000000SAMN27108556
Prado097
GCA_025454495.1ContigJALOOI000000000SAMN27108558
Prado099
GCA_025454475.1ScaffoldJALOOJ000000000SAMN27108559
Prado100
GCA_025454595.1ContigJALOOD000000000SAMN27108553
Prado094
GCA_025454555.1ContigJALOOF000000000SAMN27108555
Prado096
GCA_025454855.1ContigJALONS000000000SAMN27108542
Prado083
GCA_025455395.1ContigJALOMO000000000SAMN27108512
Prado053
GCA_025455375.1ScaffoldJALOMR000000000SAMN27108515
Prado056
GCA_025455535.1ScaffoldJALOMM000000000SAMN27108510
Prado051
GCA_025455505.1ContigJALOMK000000000SAMN27108508
Prado049
GCA_025455165.1ScaffoldJALONB000000000SAMN27108525
Prado066
GCA_025455095.1ContigJALOND000000000SAMN27108527
Prado068
GCA_025454815.1ContigJALONR000000000SAMN27108541
Prado082
GCA_025454795.1ContigJALONT000000000SAMN27108543
Prado084
GCA_025454775.1ScaffoldJALONU000000000SAMN27108544
Prado085
GCA_025454755.1ContigJALONV000000000SAMN27108545
Prado086
GCA_025454875.1ContigJALONP000000000SAMN27108539
Prado080
GCA_025454975.1ContigJALONK000000000SAMN27108534
Prado075
GCA_025454955.1ContigJALONL000000000SAMN27108535
Prado076
GCA_025455485.1ContigJALOMJ000000000SAMN27108507
Prado048
GCA_025454835.1ContigJALONQ000000000SAMN27108540
Prado081
GCA_025455125.1ScaffoldJALONE000000000SAMN27108528
Prado069
GCA_025458025.1ContigJALOTF000000000SAMN27108685
Prado226
GCA_025459195.1ScaffoldJALORF000000000SAMN27108633
Prado174
GCA_025454895.1ContigJALONO000000000SAMN27108538
Prado079
GCA_025456245.1ScaffoldJALOKZ000000000SAMN27108471
Prado012
GCA_025456495.1ScaffoldJALOKO000000000SAMN27108460
Prado001
GCA_025458735.1ScaffoldJALORV000000000SAMN27108649
Prado190
GCA_025458715.1ScaffoldJALORX000000000SAMN27108651
Prado192
GCA_025458625.1ScaffoldJALOSB000000000SAMN27108655
Prado196
GCA_025458585.1ScaffoldJALOSD000000000SAMN27108657
Prado198
GCA_025458565.1ContigJALOSE000000000SAMN27108658
Prado199
GCA_025458505.1ContigJALOSI000000000SAMN27108662
Prado203
GCA_025458325.1ContigJALOSR000000000SAMN27108671
Prado212
GCA_025458135.1ContigJALOSZ000000000SAMN27108679
Prado220
GCA_025458245.1ContigJALOSW000000000SAMN27108676
Prado217
GCA_025458205.1ScaffoldJALOSX000000000SAMN27108677
Prado218
GCA_025458875.1ScaffoldJALORO000000000SAMN27108642
Prado183
GCA_025459035.1ScaffoldJALORJ000000000SAMN27108637
Prado178
GCA_025458275.1ContigJALOSU000000000SAMN27108674
Prado215
GCA_025453955.1ContigJALOPJ000000000SAMN27108585
Prado126
GCA_025453925.1ScaffoldJALOPK000000000SAMN27108586
Prado127
GCA_025455065.1ScaffoldJALONG000000000SAMN27108530
Prado071
GCA_025455735.1ScaffoldJALOMA000000000SAMN27108498
Prado039
GCA_025453655.1ScaffoldJALOPX000000000SAMN27108599
Prado140
GCA_025453605.1ContigJALOPZ000000000SAMN27108601
Prado142
GCA_025455925.1ContigJALOLP000000000SAMN27108487
Prado028
GCA_025456015.1ScaffoldJALOLK000000000SAMN27108482
Prado023
GCA_025455985.1ContigJALOLM000000000SAMN27108484
Prado025
GCA_025455935.1ContigJALOLO000000000SAMN27108486
Prado027
GCA_025456065.1ContigJALOLH000000000SAMN27108479
Prado020
GCA_025456115.1ContigJALOLE000000000SAMN27108476
Prado017
GCA_025453445.1ContigJALOQJ000000000SAMN27108611
Prado152
GCA_025453435.1ContigJALOQI000000000SAMN27108610
Prado151
GCA_025453395.1ContigJALOQK000000000SAMN27108612
Prado153
GCA_025453415.1ScaffoldJALOQL000000000SAMN27108613
Prado154
GCA_025453495.1ContigJALOQM000000000SAMN27108614
Prado155
GCA_025453355.1ContigJALOQN000000000SAMN27108615
Prado156
GCA_025457885.1ScaffoldJALOTN000000000SAMN27108693
Prado234
GCA_025457865.1ContigJALOTP000000000SAMN27108695
Prado236
GCA_025453915.1ScaffoldJALOPL000000000SAMN27108587
Prado128
GCA_025455825.1ScaffoldJALOLU000000000SAMN27108492
Prado033
GCA_025455665.1ScaffoldJALOMC000000000SAMN27108500
Prado041
GCA_025455365.1ScaffoldJALOMP000000000SAMN27108513
Prado054
GCA_025455325.1ScaffoldJALOMT000000000SAMN27108517
Prado058
GCA_025455245.1ContigJALOMX000000000SAMN27108521
Prado062
GCA_025455205.1ScaffoldJALOMZ000000000SAMN27108523
Prado064
GCA_025455185.1ScaffoldJALONA000000000SAMN27108524
Prado065
GCA_025455685.1ContigJALOMB000000000SAMN27108499
Prado040
GCA_025454695.1ScaffoldJALONX000000000SAMN27108547
Prado088
GCA_025454655.1ScaffoldJALOOA000000000SAMN27108550
Prado091
GCA_025454615.1ScaffoldJALOOC000000000SAMN27108552
Prado093
GCA_025454515.1ContigJALOOH000000000SAMN27108557
Prado098
GCA_025458165.1ContigJALOTB000000000SAMN27108681
Prado222
GCA_025454305.1ContigJALOOQ000000000SAMN27108566
Prado107
GCA_025455015.1ScaffoldJALONI000000000SAMN27108532
Prado073
GCA_025455225.1ContigJALOMY000000000SAMN27108522
Prado063
GCA_025455265.1ScaffoldJALOMW000000000SAMN27108520
Prado061
GCA_025455465.1ScaffoldJALOMI000000000SAMN27108506
Prado047
GCA_025455445.1ContigJALOMN000000000SAMN27108511
Prado052
GCA_025458085.1ScaffoldJALOTC000000000SAMN27108682
Prado223
GCA_025458525.1ContigJALOSF000000000SAMN27108659
Prado200
GCA_025454925.1ContigJALONM000000000SAMN27108536
Prado077
GCA_025455005.1ContigJALONH000000000SAMN27108531
Prado072
GCA_025455595.1ContigJALOMD000000000SAMN27108501
Prado042
GCA_025454275.1ScaffoldJALOOS000000000SAMN27108568
Prado109
GCA_025454255.1ContigJALOOU000000000SAMN27108570
Prado111
GCA_025454225.1ScaffoldJALOOW000000000SAMN27108572
Prado113
GCA_025454215.1ScaffoldJALOOV000000000SAMN27108571
Prado112
GCA_025454115.1ContigJALOPB000000000SAMN27108577
Prado118
GCA_025454075.1ScaffoldJALOPD000000000SAMN27108579
Prado120
GCA_025454055.1ScaffoldJALOPE000000000SAMN27108580
Prado121
GCA_025454015.1ScaffoldJALOPG000000000SAMN27108582
Prado123
GCA_025453995.1ContigJALOPH000000000SAMN27108583
Prado124
GCA_025454395.1ContigJALOOM000000000SAMN27108562
Prado103
GCA_025459365.1ScaffoldJALOQR000000000SAMN27108619
Prado160
GCA_025455775.1ContigJALOLT000000000SAMN27108491
Prado032
GCA_025455285.1ContigJALOMU000000000SAMN27108518
Prado059
GCA_025455765.1ContigJALOLX000000000SAMN27108495
Prado036
GCA_025455625.1ContigJALOME000000000SAMN27108502
Prado043
GCA_025458645.1ContigJALORZ000000000SAMN27108653
Prado194
GCA_025458675.1ContigJALORY000000000SAMN27108652
Prado193
GCA_025458305.1ContigJALOSS000000000SAMN27108672
Prado213
GCA_025453745.1ScaffoldJALOPS000000000SAMN27108594
Prado135
GCA_025453775.1ContigJALOPR000000000SAMN27108593
Prado134
GCA_025453815.1ScaffoldJALOPQ000000000SAMN27108592
Prado133
GCA_025453895.1ScaffoldJALOPM000000000SAMN27108588
Prado129
GCA_025453875.1ScaffoldJALOPN000000000SAMN27108589
Prado130
GCA_025453855.1ContigJALOPO000000000SAMN27108590
Prado131
GCA_025453835.1ScaffoldJALOPP000000000SAMN27108591
Prado132
GCA_025454425.1ContigJALOOL000000000SAMN27108561
Prado102
GCA_025458545.1ContigJALOSH000000000SAMN27108661
Prado202
GCA_025458415.1ContigJALOSN000000000SAMN27108667
Prado208
GCA_025459025.1ScaffoldJALORK000000000SAMN27108638
Prado179
GCA_025458915.1ContigJALORL000000000SAMN27108639
Prado180
GCA_025458125.1ScaffoldJALOTA000000000SAMN27108680
Prado221
GCA_025458365.1ScaffoldJALOSP000000000SAMN27108669
Prado210
GCA_025459075.1ScaffoldJALORH000000000SAMN27108635
Prado176
GCA_025458335.1ScaffoldJALOSQ000000000SAMN27108670
Prado211
GCA_025455385.1ScaffoldJALOMQ000000000SAMN27108514
Prado055
GCA_025455085.1ScaffoldJALONF000000000SAMN27108529
Prado070
GCA_025455145.1ContigJALONC000000000SAMN27108526
Prado067
GCA_025455475.1ScaffoldJALOML000000000SAMN27108509
Prado050
GCA_025455575.1ContigJALOMH000000000SAMN27108505
Prado046
GCA_025455565.1ContigJALOMG000000000SAMN27108504
Prado045
GCA_025456105.1ScaffoldJALOLG000000000SAMN27108478
Prado019
GCA_025454375.1ScaffoldJALOOO000000000SAMN27108564
Prado105
GCA_025457985.1ScaffoldJALOTI000000000SAMN27108688
Prado229
GCA_025458445.1ContigJALOSL000000000SAMN27108665
Prado206
GCA_025460905.1ScaffoldJALOSC000000000SAMN27108656
Prado197
GCA_025453675.1ContigJALOPW000000000SAMN27108598
Prado139
GCA_025457905.1ScaffoldJALOTM000000000SAMN27108692
Prado233
GCA_025453715.1ContigJALOPT000000000SAMN27108595
Prado136
GCA_025453795.1ContigJALOPU000000000SAMN27108596
Prado137
GCA_025453685.1ContigJALOPV000000000SAMN27108597
Prado138
GCA_025458755.1ScaffoldJALORT000000000SAMN27108647
Prado188
GCA_025455045.1ScaffoldJALONJ000000000SAMN27108533
Prado074
GCA_025459425.1ScaffoldJALOQF000000000SAMN27108607
Prado148
GCA_025453555.1ScaffoldJALOQC000000000SAMN27108604
Prado145
GCA_025453505.1ScaffoldJALOQG000000000SAMN27108608
Prado149
GCA_025453525.1ScaffoldJALOQD000000000SAMN27108605
Prado146
GCA_025458815.1ScaffoldJALORS000000000SAMN27108646
Prado187
GCA_025454315.1ScaffoldJALOOP000000000SAMN27108565
Prado106
GCA_025457685.1ContigJALOTV000000000SAMN27108701
Prado242
GCA_025454445.1ScaffoldJALOOK000000000SAMN27108560
Prado101
GCA_025454405.1ScaffoldJALOON000000000SAMN27108563
Prado104
GCA_025458985.1ScaffoldJALORM000000000SAMN27108640
Prado181
GCA_025458705.1ScaffoldJALORW000000000SAMN27108650
Prado191
GCA_025458485.1ContigJALOSJ000000000SAMN27108663
Prado204
GCA_025458385.1ScaffoldJALOSO000000000SAMN27108668
Prado209
GCA_025453305.1ContigJALOQO000000000SAMN27108616
Prado157
GCA_025453375.1ScaffoldJALOQT000000000SAMN27108621
Prado162
GCA_025459275.1ScaffoldJALOQW000000000SAMN27108624
Prado165
GCA_025459245.1ContigJALOQZ000000000SAMN27108627
Prado168
GCA_025459355.1ScaffoldJALOQS000000000SAMN27108620
Prado161
GCA_025459345.1ScaffoldJALOQU000000000SAMN27108622
Prado163
GCA_025459325.1ContigJALOQV000000000SAMN27108623
Prado164
GCA_025459265.1ContigJALOQX000000000SAMN27108625
Prado166
GCA_025459225.1ScaffoldJALORA000000000SAMN27108628
Prado169
GCA_025459145.1ScaffoldJALORD000000000SAMN27108631
Prado172
GCA_025459125.1ScaffoldJALORE000000000SAMN27108632
Prado173
GCA_025459175.1ScaffoldJALORC000000000SAMN27108630
Prado171
GCA_025459165.1ScaffoldJALORB000000000SAMN27108629
Prado170
GCA_025459285.1ScaffoldJALOQY000000000SAMN27108626
Prado167
GCA_025453315.1ContigJALOQQ000000000SAMN27108618
Prado159
GCA_025453295.1ContigJALOQP000000000SAMN27108617
Prado158
GCA_025453615.1ScaffoldJALOQA000000000SAMN27108602
Prado143
GCA_025453595.1ScaffoldJALOQB000000000SAMN27108603
Prado144
GCA_025453575.1ScaffoldJALOQE000000000SAMN27108606
Prado147
GCA_025457785.1ScaffoldJALOTS000000000SAMN27108698
Prado239
GCA_025458405.1ScaffoldJALOSM000000000SAMN27108666
Prado207
GCA_025456265.1ScaffoldJALOKX000000000SAMN27108469
Prado010
GCA_025454915.1ContigJALONN000000000SAMN27108537
Prado078
GCA_025458045.1ContigJALOTE000000000SAMN27108684
Prado225
GCA_025458605.1ScaffoldJALOSA000000000SAMN27108654
Prado195
GCA_025458035.1ContigJALOTH000000000SAMN27108687
Prado228
GCA_025458265.1ScaffoldJALOST000000000SAMN27108673
Prado214
GCA_025458775.1ContigJALORU000000000SAMN27108648
Prado189
GCA_025458805.1ScaffoldJALORQ000000000SAMN27108644
Prado185
GCA_025458465.1ScaffoldJALOSK000000000SAMN27108664
Prado205
GCA_025455635.1ScaffoldJALOMF000000000SAMN27108503
Prado044
GCA_025455695.1ScaffoldJALOLZ000000000SAMN27108497
Prado038
GCA_025458665.1ScaffoldJALOSG000000000SAMN27108660
Prado201
GCA_025456005.1ScaffoldJALOLL000000000SAMN27108483
Prado024
GCA_025455895.1ScaffoldJALOLQ000000000SAMN27108488
Prado029
GCA_025459065.1ScaffoldJALORG000000000SAMN27108634
Prado175
GCA_025457965.1ScaffoldJALOTJ000000000SAMN27108689
Prado230
GCA_025457915.1ContigJALOTL000000000SAMN27108691
Prado232
GCA_025457925.1ScaffoldJALOTK000000000SAMN27108690
Prado231
GCA_025455795.1ScaffoldJALOLW000000000SAMN27108494
Prado035
GCA_025455785.1ContigJALOLV000000000SAMN27108493
Prado034
GCA_025458865.1ContigJALORP000000000SAMN27108643
Prado184
GCA_025458905.1ScaffoldJALORN000000000SAMN27108641
Prado182
GCA_025454325.1ScaffoldJALOOT000000000SAMN27108569
Prado110
GCA_025454295.1ScaffoldJALOOR000000000SAMN27108567
Prado108
GCA_025454025.1ScaffoldJALOPF000000000SAMN27108581
Prado122
GCA_025454095.1ContigJALOPC000000000SAMN27108578
Prado119
GCA_025454175.1ContigJALOOX000000000SAMN27108573
Prado114
GCA_025453975.1ContigJALOPI000000000SAMN27108584
Prado125
GCA_025459085.1ContigJALORI000000000SAMN27108636
Prado177
GCA_025458105.1ContigJALOTD000000000SAMN27108683
Prado224
GCA_025456225.1ScaffoldJALOLB000000000SAMN27108473
Prado014
GCA_025456145.1ScaffoldJALOLD000000000SAMN27108475
Prado016
GCA_025456385.1ScaffoldJALOKS000000000SAMN27108464
Prado005
GCA_025454155.1ScaffoldJALOOZ000000000SAMN27108575
Prado116
GCA_025454125.1ScaffoldJALOPA000000000SAMN27108576
Prado117
GCA_025454185.1ScaffoldJALOOY000000000SAMN27108574
Prado115
GCA_025455345.1ScaffoldJALOMS000000000SAMN27108516
Prado057
GCA_025455865.1ScaffoldJALOLS000000000SAMN27108490
Prado031
GCA_025457845.1ContigJALOTO000000000SAMN27108694
Prado235
GCA_025457815.1ContigJALOTQ000000000SAMN27108696
Prado237
GCA_025458005.1ScaffoldJALOTG000000000SAMN27108686
Prado227
GCA_025458185.1ContigJALOSY000000000SAMN27108678
Prado219
GCA_025458215.1ScaffoldJALOSV000000000SAMN27108675
Prado216
GCA_025457745.1ScaffoldJALOTT000000000SAMN27108699
Prado240
GCA_025457725.1ScaffoldJALOTU000000000SAMN27108700
Prado241
GCA_025457615.1ContigJALOTZ000000000SAMN27108705
Prado246
GCA_025456395.1ScaffoldJALOKR000000000SAMN27108463
Prado004
GCA_025456345.1ContigJALOKU000000000SAMN27108466
Prado007
GCA_025456305.1ScaffoldJALOKW000000000SAMN27108468
Prado009
GCA_025453475.1ContigJALOQH000000000SAMN27108609
Prado150
GCA_025453735.1ScaffoldJALOPY000000000SAMN27108600
Prado141
GCA_025491035.1ScaffoldJAOQID000000000SAMN26855485
CSM_Prado_Jun18_A3_Bubble_DNA
GCA_025491015.1ScaffoldJAOQIA000000000SAMN26854332
CSM_Prado_Oct18_PM_1.5z2_DNA
GCA_025490995.1ScaffoldJAOQHZ000000000SAMN26854324
CSM_Prado_Oct18_PM_0.5z2_DNA
GCA_025490975.1ScaffoldJAOQIB000000000SAMN26855351
CSM_Prado_Oct18_PM_2.5z2_DNA
GCA_025490955.1ScaffoldJAOQIC000000000SAMN26855375
CSM_Prado_Oct18_PM_Bottom_DNA
SRA Data Details
ParameterValue
Data volume, Gbases2
Data volume, Mbytes1306

Supplemental Content

Recent activity

  • wetland metagenome
    wetland metagenome
    Prado Wetlands Open-Water Wetland Biomat Metagenomes, Metatranscriptomes, and Amplicon Sequences
    BioProject

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