ID 796914 - BioProject

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Accession: PRJEB49987 ID: 796914

EMG produced TPA metagenomics assembly of PRJEB36291 data set (Defining the oral microbiome by Whole Genome Sequencing and resistome analysis: the complexity of the healthy picture).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB36291, and was assembled with megahit v1. More...

Accession	PRJEB49987
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 13-Jan-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	10922
WGS master	88
Publications
PubMed	1
PMC	1
Other datasets
BioSample	88
Assembly	88

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

88
88

Assembly	WGS	BioSample	Taxonomy
GCA_927911435.1	CAKMPM000000000	SAMEA12514463	Actinomyces graevenitzii
GCA_927911765.1	CAKMQD000000000	SAMEA12514475	Aggregatibacter aphrophilus
GCA_927911575.1	CAKMPS000000000	SAMEA12514490	Aggregatibacter kilianii
GCA_927911055.1	CAKMOS000000000	SAMEA12514489	Capnocytophaga sputigena
GCA_927911385.1	CAKMPJ000000000	SAMEA12514427	Corynebacterium freiburgense
GCA_927911805.1	CAKMQU000000000	SAMEA12514502	Corynebacterium mustelae
GCA_927911445.1	CAKMPT000000000	SAMEA12514480	Granulicatella elegans
GCA_927911315.1	CAKMPC000000000	SAMEA12514488	Haemophilus haemolyticus
GCA_927910915.1	CAKMOJ000000000	SAMEA12514447	Haemophilus haemolyticus
GCA_927910825.1	CAKMOG000000000	SAMEA12514433	Haemophilus parahaemolyticus
GCA_927911775.1	CAKMQT000000000	SAMEA12514467	Haemophilus parainfluenzae
GCA_927910935.1	CAKMON000000000	SAMEA12514479	Haemophilus parainfluenzae
GCA_927912495.1	CAKMQW000000000	SAMEA12514425	Haemophilus parainfluenzae
GCA_927911645.1	CAKMPY000000000	SAMEA12514422	Haemophilus parainfluenzae
GCA_927911415.1	CAKMPL000000000	SAMEA12514424	Haemophilus paraphrohaemolyticus
GCA_927911485.1	CAKMPZ000000000	SAMEA12514484	Hoylesella nanceiensis
GCA_927911725.1	CAKMQS000000000	SAMEA12514486	Kingella denitrificans
GCA_927912565.1	CAKMQZ000000000	SAMEA12514477	Lactobacillus delbrueckii
GCA_927911035.1	CAKMOR000000000	SAMEA12514439	Lautropia mirabilis
GCA_927911155.1	CAKMOX000000000	SAMEA12514483	Neisseria elongata
GCA_927911225.1	CAKMPD000000000	SAMEA12514472	Neisseria sicca
GCA_927910845.1	CAKMOA000000000	SAMEA12514505	Prevotella histicola
GCA_927910805.1	CAKMOB000000000	SAMEA12514426	Prevotella intermedia
GCA_927911715.1	CAKMQR000000000	SAMEA12514461	Prevotella melaninogenica
GCA_927912715.1	CAKMRF000000000	SAMEA12514493	Prevotella pallens
GCA_927911145.1	CAKMOZ000000000	SAMEA12514466	Rothia aeria
GCA_927911365.1	CAKMPH000000000	SAMEA12514468	Rothia dentocariosa
GCA_927911075.1	CAKMOT000000000	SAMEA12514444	Rothia dentocariosa
GCA_927912675.1	CAKMRB000000000	SAMEA12514450	Rothia dentocariosa
GCA_927911755.1	CAKMQQ000000000	SAMEA12514492	Rothia mucilaginosa
GCA_927911585.1	CAKMPV000000000	SAMEA12514449	Rothia mucilaginosa
GCA_927912645.1	CAKMRC000000000	SAMEA12514432	Rothia mucilaginosa
GCA_927911795.1	CAKMQL000000000	SAMEA12514497	Schaalia odontolytica
GCA_927911655.1	CAKMQI000000000	SAMEA12514455	Simonsiella muelleri
GCA_927911465.1	CAKMPQ000000000	SAMEA12514482	Stomatobaculum longum
GCA_927911495.1	CAKMPU000000000	SAMEA12514464	Streptococcus mitis
GCA_927911205.1	CAKMPA000000000	SAMEA12514504	Streptococcus mitis
GCA_927911535.1	CAKMQC000000000	SAMEA12514499	Streptococcus mitis
GCA_927910715.1	CAKMNZ000000000	SAMEA12514435	Streptococcus mitis
GCA_927911355.1	CAKMPG000000000	SAMEA12514436	Streptococcus mitis
GCA_927911705.1	CAKMQG000000000	SAMEA12514462	Streptococcus oralis
GCA_927912525.1	CAKMQY000000000	SAMEA12514446	Streptococcus oralis
GCA_927912595.1	CAKMRE000000000	SAMEA12514440	Streptococcus sanguinis
GCA_927911625.1	CAKMQJ000000000	SAMEA12514429	Veillonella atypica
GCA_927910775.1	CAKMOC000000000	SAMEA12514476	Veillonella parvula
GCA_927911045.1	CAKMOQ000000000	SAMEA12514485	Veillonella parvula
GCA_927911685.1	CAKMQE000000000	SAMEA12514431	uncultured Actinomyces sp.
GCA_927911455.1	CAKMQB000000000	SAMEA12514452	uncultured Actinomyces sp.
GCA_927911375.1	CAKMPI000000000	SAMEA12514423	uncultured Actinomyces sp.
GCA_927910725.1	CAKMNY000000000	SAMEA12514428	uncultured Actinomyces sp.
GCA_927911785.1	CAKMQP000000000	SAMEA12514470	uncultured Aggregatibacter sp.
GCA_927911505.1	CAKMPN000000000	SAMEA12514430	uncultured Alloprevotella sp.
GCA_927910875.1	CAKMOH000000000	SAMEA12514473	uncultured Alloprevotella sp.
GCA_927911405.1	CAKMPR000000000	SAMEA12514465	uncultured Atopobium sp.
GCA_927910745.1	CAKMNX000000000	SAMEA12514481	uncultured Candidatus Saccharibacteria bacterium
GCA_927910995.1	CAKMOL000000000	SAMEA12514441	uncultured Candidatus Saccharibacteria bacterium
GCA_927911635.1	CAKMPW000000000	SAMEA12514456	uncultured Candidatus Saccharibacteria bacterium
GCA_927911745.1	CAKMQF000000000	SAMEA12514506	uncultured Gemella sp.
GCA_927911695.1	CAKMQO000000000	SAMEA12514453	uncultured Gemella sp.
GCA_927911085.1	CAKMOV000000000	SAMEA12514496	uncultured Haemophilus sp.
GCA_927911595.1	CAKMQK000000000	SAMEA12514498	uncultured Haemophilus sp.
GCA_927911235.1	CAKMOY000000000	SAMEA12514442	uncultured Moraxella sp.
GCA_927911515.1	CAKMQH000000000	SAMEA12514494	uncultured Neisseria sp.
GCA_927911565.1	CAKMPO000000000	SAMEA12514507	uncultured Neisseria sp.
GCA_927910975.1	CAKMOO000000000	SAMEA12514500	uncultured Neisseria sp.
GCA_927911295.1	CAKMPB000000000	SAMEA12514454	uncultured Neisseria sp.
GCA_927911675.1	CAKMQA000000000	SAMEA12514487	uncultured Porphyromonas sp.
GCA_927910895.1	CAKMOF000000000	SAMEA12514478	uncultured Porphyromonas sp.
GCA_927911665.1	CAKMQN000000000	SAMEA12514503	uncultured Porphyromonas sp.
GCA_927912775.1	CAKMRG000000000	SAMEA12514469	uncultured Porphyromonas sp.
GCA_927910985.1	CAKMOP000000000	SAMEA12514434	uncultured Porphyromonas sp.
GCA_927912655.1	CAKMRD000000000	SAMEA12514471	uncultured Porphyromonas sp.
GCA_927910925.1	CAKMOK000000000	SAMEA12514420	uncultured Porphyromonas sp.
GCA_927910885.1	CAKMOD000000000	SAMEA12514451	uncultured Prevotella sp.
GCA_927911195.1	CAKMOW000000000	SAMEA12514458	uncultured Prevotellaceae bacterium
GCA_927911275.1	CAKMPF000000000	SAMEA12514443	uncultured Propionibacteriaceae bacterium
GCA_927911475.1	CAKMPP000000000	SAMEA12514459	uncultured Solobacterium sp.
GCA_927910965.1	CAKMOM000000000	SAMEA12514495	uncultured Streptococcus sp.
GCA_927910865.1	CAKMOI000000000	SAMEA12514445	uncultured Streptococcus sp.
GCA_927911825.1	CAKMQV000000000	SAMEA12514448	uncultured Streptococcus sp.
GCA_927910755.1	CAKMOE000000000	SAMEA12514501	uncultured Streptococcus sp.
GCA_927911555.1	CAKMPX000000000	SAMEA12514437	uncultured Streptococcus sp.
GCA_927912515.1	CAKMQX000000000	SAMEA12514491	uncultured Veillonella sp.
GCA_927911395.1	CAKMPK000000000	SAMEA12514474	uncultured Veillonella sp.
GCA_927911285.1	CAKMPE000000000	SAMEA12514438	uncultured Veillonella sp.
GCA_927911615.1	CAKMQM000000000	SAMEA12514460	uncultured Xylanimonas sp.
GCA_927912585.1	CAKMRA000000000	SAMEA12514457	uncultured bacterium
GCA_927911165.1	CAKMOU000000000	SAMEA12514421	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJEB36291 data set (Defining the oral microbiome by Whole Genome Sequencing and resistome analysis: the complexity of the healthy picture).

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