ID 788518 - BioProject

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Accession: PRJNA788518 ID: 788518

barcodingPTplants - DNA barcoding aromatic, medicinal, and condiment plants from Portugal

The world market of aromatic, medicinal, and condiment plant (AMCP) production is constantly growing, with Portugal following the same trend. AMCPs have a big cross- sector effect impacting the pharma, cosmetic, and agri-food industries. Providing assurance to consumers and other stakeholders about the integrity, safety, authenticity, and quality of Portuguese AMCP-based products is of prime importance in adding value and trust to the national economy. DNA barcoding is a crucial method for identifying species in a wide panel of raw to strongly processed commodities, where accurate taxonomical adscription of correct names to DNA sequences is essential. This project aims to construct a reference collection curated by a national herbarium composed of all commercially relevant AMCPs from Portugal. More...

Accession	PRJNA788518
Type	Umbrella project
Grants	"barcodingPTplants, DNA barcoding aromatic, medicinal, and condiment plants from Portugal" (Grant ID 31074, Fundo Europeu de Desenvolvimento Regional, Fundacao para a Ciencia e Tecnologia)
Submission	Registration date: 13-Dec-2021 - iBET - Instituto de Biologia Experimental e Tecnologica - Genoscope - iBET
Relevance	Agricultural, Medical, Industrial, Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	445
SRA Experiments	10
Protein Sequences	11501
Publications
PubMed	2
PMC	2
Other datasets
BioSample	208

SRA Data Details

Parameter	Value
Data volume, Gbases	11
Data volume, Mbytes	7395

This project encompasses the following 10 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

SRA or Trace
No data links
Total

5
5
10

BioProject accession	Assembly level	Name	Title
PRJNA848681	SRA or Trace	Centaurium erythraea subsp. majus	barcodingPTplants - Centaurium erythraea subsp. majus isolate BPTPS121 genome sequencing and assembly (iBET - Instituto de Biologia...)
PRJNA789447	SRA or Trace	Echium plantagineum	barcodingPTplants - Echium plantagineum isolate BPTPS251 genome sequencing and assembly (iBET - Instituto de Biologia...)
PRJNA848680	SRA or Trace	Glandora prostrata subsp. lusitanica	barcodingPTplants - Glandora prostrata subsp. lusitanica isolate BPTPS049 genome sequencing and assembly (iBET - Instituto de Biologia...)
PRJNA792718	SRA or Trace	Multilocus DNA metabarcoding of characterised complex mixtures and real samples containing members of the Boraginaceae family	Multilocus DNA metabarcoding of characterised complex mixtures and real samples containing members of the Boraginaceae family (iBET - Instituto de Biologia...)
PRJNA792567	SRA or Trace	Nonea vesicaria	barcodingPTplants - Nonea vesicaria isolate BPTPS250 genome sequencing and assembly (iBET - Instituto de Biologia...)

List all 10 'Genome sequencing' projects...

BioProject accession	Assembly level	Name	Title
PRJNA848681	SRA or Trace	Centaurium erythraea subsp. majus	barcodingPTplants - Centaurium erythraea subsp. majus isolate BPTPS121 genome sequencing and assembly (iBET - Instituto de Biologia...)
PRJNA789447	SRA or Trace	Echium plantagineum	barcodingPTplants - Echium plantagineum isolate BPTPS251 genome sequencing and assembly (iBET - Instituto de Biologia...)
PRJNA848680	SRA or Trace	Glandora prostrata subsp. lusitanica	barcodingPTplants - Glandora prostrata subsp. lusitanica isolate BPTPS049 genome sequencing and assembly (iBET - Instituto de Biologia...)
PRJNA792718	SRA or Trace	Multilocus DNA metabarcoding of characterised complex mixtures and real samples containing members of the Boraginaceae family	Multilocus DNA metabarcoding of characterised complex mixtures and real samples containing members of the Boraginaceae family (iBET - Instituto de Biologia...)
PRJNA792567	SRA or Trace	Nonea vesicaria	barcodingPTplants - Nonea vesicaria isolate BPTPS250 genome sequencing and assembly (iBET - Instituto de Biologia...)
PRJNA835868	No data links	barcodingPTplants - Aromatic, medicinal, and condiment plant genome sequencing and assembly using short and long reads	barcodingPTplants - Aromatic, medicinal, and condiment plant genome sequencing and assembly using short and long reads (iBET - Instituto de Biologia...)
PRJNA835869	No data links	barcodingPTplants - Aromatic, medicinal, and condiment plant genome sequencing and assembly using short reads - General	barcodingPTplants - Aromatic, medicinal, and condiment plant genome sequencing and assembly using short reads - General (iBET - Instituto de Biologia...)
PRJNA839262	No data links	barcodingPTplants - Aromatic, medicinal, and condiment plant genome sequencing and assembly using short reads - ITS containing regions	barcodingPTplants - Aromatic, medicinal, and condiment plant genome sequencing and assembly using short reads - ITS containing regions (iBET - Instituto de Biologia...)
PRJNA839282	No data links	barcodingPTplants - Aromatic, medicinal, and condiment plant genome sequencing and assembly using short reads - Other	barcodingPTplants - Aromatic, medicinal, and condiment plant genome sequencing and assembly using short reads - Other (iBET - Instituto de Biologia...)
PRJNA843218	No data links	barcodingPTplants - Aromatic, medicinal, and condiment plant genome sequencing and assembly using short reads - matK, rbcL, and trnL DNA barcodes	barcodingPTplants - Aromatic, medicinal, and condiment plant genome sequencing and assembly using short reads - matK, rbcL, and trnL DNA barcodes (iBET - Instituto de Biologia...)

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