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Accession: PRJNA770188 ID: 770188

Determinants of phage host range in porcine enterotoxigenic Escherichia coli

Enterotoxigenic Escherichia coli (ETEC) are one the leading cause of porcine post-weaning diarrhoea, generally characterized by their plasmids encoding fimbriae (F4, F18, F5, F6, and F41) and enterotoxins (ST1, ST2, and LT). More...
AccessionPRJNA770188
Data TypeGenome sequencing and assembly
ScopeMultispecies
Grants
  • "BioPIGLET - Biocontrol of post-weaning diarrhoea in piglets: a sustainable alternative to antibiotics and zinc oxide" (Grant ID 7076-00038B, Innovation Fund Denmark)
SubmissionRegistration date: 11-Oct-2021
University of Southampton
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)80
Other datasets
BioSample84
Assembly80
Assembly details:
Assembly levelNumber of Assemblies
80
80
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_021029505.1ContigJAJFOR000000000SAMN22211651
568_CL100127346_L02
GCA_021029485.1ContigJAJFOQ000000000SAMN22211608
515_CL100139376_L02
GCA_021554775.1ContigJAJHPX000000000SAMN22211629
ETECID:54
GCA_021649855.1ContigJAJAQJ000000000SAMN22211589
503_CL100127346_L02
GCA_021649825.1ContigJAJAQK000000000SAMN22211590
504_CL100127346_L02
GCA_021649805.1ContigJAJAQM000000000SAMN22211592
508_CL100127346_L02
GCA_021649785.1ContigJAJAQL000000000SAMN22211591
506_CL100127346_L02
GCA_021649765.1ContigJAJAQO000000000SAMN22211594
511_CL100127346_L02
GCA_021649745.1ContigJAJAQN000000000SAMN22211593
510_CL100127346_L02
GCA_021649725.1ContigJAJAQP000000000SAMN22211595
501_CL100139376_L02
GCA_021649685.1ContigJAJAQQ000000000SAMN22211596
503_CL100139376_L02
GCA_021649665.1ContigJAJAQU000000000SAMN22211600
507_CL100139376_L02
GCA_021649675.1ContigJAJAQR000000000SAMN22211597
504_CL100139376_L02
GCA_021649645.1ContigJAJAQT000000000SAMN22211599
506_CL100139376_L02
GCA_021649625.1ContigJAJAQS000000000SAMN22211598
505_CL100139376_L02
GCA_021649605.1ContigJAJAQV000000000SAMN22211601
508_CL100139376_L02
GCA_021649585.1ContigJAJAQX000000000SAMN22211603
510_CL100139376_L02
GCA_021649555.1ContigJAJAQZ000000000SAMN22211605
512_CL100139376_L02
GCA_021649545.1ContigJAJAQW000000000SAMN22211602
509_CL100139376_L02
GCA_021649505.1ContigJAJARA000000000SAMN22211606
513_CL100139376_L02
GCA_021649515.1ContigJAJAQY000000000SAMN22211604
511_CL100139376_L02
GCA_021649485.1ContigJAJARB000000000SAMN22211607
514_CL100139376_L02
GCA_021649445.1ContigJAJARC000000000SAMN22211609
516_CL100139376_L02
GCA_021649435.1ContigJAJARE000000000SAMN22211611
519_CL100139376_L02
GCA_021649415.1ContigJAJARD000000000SAMN22211610
518_CL100139376_L02
GCA_021649405.1ContigJAJARF000000000SAMN22211612
522_CL100139376_L02
GCA_021649385.1ContigJAJARG000000000SAMN22211613
523_CL100139376_L02
GCA_021649355.1ContigJAJARI000000000SAMN22211615
525_CL100139376_L02
GCA_021649345.1ContigJAJARH000000000SAMN22211614
524_CL100139376_L02
GCA_021649325.1ContigJAJARJ000000000SAMN22211616
526_CL100139376_L02
GCA_021649305.1ContigJAJARK000000000SAMN22211617
527_CL100139376_L02
GCA_021649275.1ContigJAJARO000000000SAMN22211621
531_CL100139376_L02
GCA_021649265.1ContigJAJARL000000000SAMN22211618
528_CL100139376_L02
GCA_021649245.1ContigJAJARM000000000SAMN22211619
529_CL100139376_L02
GCA_021649225.1ContigJAJARN000000000SAMN22211620
530_CL100139376_L02
GCA_021649205.1ContigJAJARP000000000SAMN22211622
532_CL100139376_L02
GCA_021649185.1ContigJAJARQ000000000SAMN22211623
533_CL100139376_L02
GCA_021649165.1ContigJAJARS000000000SAMN22211625
535_CL100139376_L02
GCA_021649135.1ContigJAJART000000000SAMN22211626
536_CL100139376_L02
GCA_021649125.1ContigJAJARR000000000SAMN22211624
534_CL100139376_L02
GCA_021649105.1ContigJAJARU000000000SAMN22211627
537_CL100139376_L02
GCA_021649085.1ContigJAJARV000000000SAMN22211628
538_CL100139376_L02
GCA_021649055.1ContigJAJARY000000000SAMN22211633
543_CL100127346_L02
GCA_021649045.1ContigJAJASD000000000SAMN22211639
552_CL100127346_L02
GCA_021649025.1ContigJAJARW000000000SAMN22211630
539_CL100127346_L02
GCA_021648985.1ContigJAJARZ000000000SAMN22211634
544_CL100127346_L02
GCA_021648995.1ContigJAJARX000000000SAMN22211632
542_CL100127346_L02
GCA_021648955.1ContigJAJASB000000000SAMN22211637
550_CL100127346_L02
GCA_021648945.1ContigJAJASA000000000SAMN22211636
549_CL100127346_L02
GCA_021648925.1ContigJAJASC000000000SAMN22211638
551_CL100127346_L02
GCA_021648905.1ContigJAJAST000000000SAMN22211658
575_CL100127346_L02
GCA_021647175.1ContigJAJASF000000000SAMN22211642
555_CL100127346_L02
GCA_021647165.1ContigJAJASE000000000SAMN22211640
553_CL100127346_L02
GCA_021646645.1ContigJAJATH000000000SAMN22211672
596_CL100127346_L02
GCA_021646635.1ContigJAJATE000000000SAMN22211669
593_CL100127346_L02
GCA_021646615.1ContigJAJATD000000000SAMN22211668
590_CL100127346_L02
GCA_021646605.1ContigJAJATF000000000SAMN22211670
594_CL100127346_L02
GCA_021646575.1ContigJAJATG000000000SAMN22211671
595_CL100127346_L02
GCA_021647125.1ContigJAJASG000000000SAMN22211644
558_CL100127346_L02
GCA_021647095.1ContigJAJASJ000000000SAMN22211647
562_CL100127346_L02
GCA_021647085.1ContigJAJASI000000000SAMN22211646
561_CL100127346_L02
GCA_021647065.1ContigJAJASH000000000SAMN22211645
560_CL100127346_L02
GCA_021647025.1ContigJAJASK000000000SAMN22211648
564_CL100127346_L02
GCA_021647035.1ContigJAJASL000000000SAMN22211649
565_CL100127346_L02
GCA_021647005.1ContigJAJASM000000000SAMN22211650
566_CL100127346_L02
GCA_021646965.1ContigJAJASP000000000SAMN22211654
571_CL100127346_L02
GCA_021646945.1ContigJAJASO000000000SAMN22211653
570_CL100127346_L02
GCA_021646955.1ContigJAJASN000000000SAMN22211652
569_CL100127346_L02
GCA_021646925.1ContigJAJASQ000000000SAMN22211655
572_CL100127346_L02
GCA_021646905.1ContigJAJASR000000000SAMN22211656
573_CL100127346_L02
GCA_021646875.1ContigJAJASS000000000SAMN22211657
574_CL100127346_L02
GCA_021646865.1ContigJAJASV000000000SAMN22211660
577_CL100127346_L02
GCA_021646835.1ContigJAJASW000000000SAMN22211661
578_CL100127346_L02
GCA_021646825.1ContigJAJASU000000000SAMN22211659
576_CL100127346_L02
GCA_021646805.1ContigJAJASX000000000SAMN22211662
580_CL100127346_L02
GCA_021646735.1ContigJAJASY000000000SAMN22211663
581_CL100127346_L02
GCA_021646755.1ContigJAJATC000000000SAMN22211667
589_CL100127346_L02
GCA_021646745.1ContigJAJATB000000000SAMN22211666
587_CL100127346_L02
GCA_021646715.1ContigJAJASZ000000000SAMN22211664
583_CL100127346_L02
GCA_021646705.1ContigJAJATA000000000SAMN22211665
585_CL100127346_L02

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