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Accession: PRJNA768921 ID: 768921

Whole exome sequencing in Alopecia Areata identifies rare mutations in KRT82 (human)

See Genome Information for Homo sapiens
Alopecia areata (AA) is an autoimmune disorder, in which the body's own immune cells attack hair follicels resulting in hair loss. It is a complex genetic disease with 14 associated loci previously identified in our genome-wide association study (GWAS). In the study, we performed the whole-exome sequencing (WES) on 849 AA patients with the aim to identify the novel rare variants in genes contributing to AA susceptibility. We performed gene-collapsing analyses and identified keratin 82 (KRT82 Gene ID: 3888) as the highest associated AA gene in the three rare damaging collapsing models with p<6.7E-07 in one of the models. The KRT82 gene is a hair-specific type II keratin expressed in the hair shaft cuticle during the anagen phase of the hair cycle. We reported the lower expression of... (for more see dbGaP study page.)
AccessionPRJNA768921; dbGaP: phs002632
Data TypePhenotype or Genotype
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
SubmissionRegistration date: 5-Oct-2021
COLUMBIA UNIVERSITY HEALTH SCIENCES
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments849
Other datasets
BioSample849
Genotype and Phenotype (dbGaP)1
SRA Data Details
ParameterValue
Data volume, Mbases282
Data volume, Mbytes312

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