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Accession: PRJNA748922 ID: 748922

Burkholderia cepacia complex (Bcc) genome sequencing and genotyping

The aim of this study was to assess the susceptibility of Bcc to ceftazidime/avibactam and standard drugs for treatment in people with CF and to determine the respective genomic determinants of resistance.
AccessionPRJNA748922
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsSchaumburg F et al., "Susceptibility of Burkholderia cepacia Complex to Ceftazidime/Avibactam and Standard Drugs of Treatment for Cystic Fibrosis Patients.", Microb Drug Resist, 2022 May;28(5):545-550
SubmissionRegistration date: 22-Jul-2021
University Hospital Muenster
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)148
WGS master27
Genomic DNA121
Protein Sequences219458
Publications
PubMed1
Other datasets
BioSample64
Assembly64
Assembly details:
Assembly levelNumber of Assemblies
34
30
64
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_023896315.1ChromosomeJAKFAD000000000
SAMN20348587
2011Ycf942II
GCA_023896215.1ChromosomeJAKFAK000000000
SAMN20348571
2009Ycf238I
GCA_023374855.1Complete genomeSAMN20348570
2008Ycf657
GCA_023374835.1Complete genomeSAMN20348572
2009Ycf95III
GCA_023374335.1Complete genomeSAMN20348617
2019Y71443953II
GCA_023374715.1Complete genomeSAMN20348580
2011Ycf427V
GCA_023374675.1Complete genomeSAMN20348582
2011Ycf793I
GCA_023374475.1Complete genomeSAMN20348603
2017Y70952565VI
GCA_030064565.1ChromosomeSAMN20348622
2020Y71669323
GCA_023374455.1Complete genomeSAMN20348607
2017Y71078597II
GCA_023374435.1Complete genomeSAMN20348608
2017Y71079786
GCA_023374415.1Complete genomeSAMN20348609
2017Y71087112III
GCA_023374395.1Complete genomeSAMN20348612
2019Y60005016V
GCA_023374375.1Complete genomeSAMN20348614
2019Y71417852IX
GCA_023374355.1Complete genomeSAMN20348615
2019Y71421880II
GCA_023374655.1Complete genomeSAMN20348590
2014Y70439247
GCA_023374635.1Complete genomeSAMN20348591
2014Y70518672I
GCA_023374615.1Complete genomeSAMN20348592
2014Y70522077
GCA_023374595.1Complete genomeSAMN20348593
2014Y70532416II
GCA_023374575.1Complete genomeSAMN20348594
2015Y70629342III
GCA_023374555.1ChromosomeSAMN20348596
2015Y70709107II
GCA_023374695.1Complete genomeSAMN20348581
2011Ycf521III
GCA_023374895.1Complete genomeSAMN20348568
2007Ycf875II
GCA_023374875.1Complete genomeSAMN20348569
2008Ycf542
GCA_023374815.1Complete genomeSAMN20348574
2010Ycf31III
GCA_023374795.1Complete genomeSAMN20348575
2010Ycf41
GCA_023374775.1Complete genomeSAMN20348576
2010Ycf503
GCA_023374755.1Complete genomeSAMN20348577
2010Ycf576V
GCA_023374735.1Complete genomeSAMN20348578
2010Ycf635
GCA_023374315.1Complete genomeSAMN20348620
2020Y71628512IV
GCA_023374535.1Complete genomeSAMN20348598
2016Y70836300
GCA_023374515.1Complete genomeSAMN20348600
2016Y70888756VI
GCA_023374495.1Complete genomeSAMN20348601
2016Y70910410I
GCA_023373705.1ChromosomeSAMN20348561
2003Ycf875II
GCA_023373685.1Complete genomeSAMN20348562
2004Ycf1069VI
GCA_023373665.1Complete genomeSAMN20348565
2005Ycf971III
GCA_023373645.1Complete genomeSAMN20348566
2006Ycf877
GCA_023373625.1Complete genomeSAMN20348567
2007Ycf278
GCA_023383515.1ChromosomeJAKFAN000000000
SAMN20348559
2003Ycf728
GCA_023383485.1ChromosomeJAKFAJ000000000
SAMN20348573
2010Ycf205III
GCA_023383465.1ChromosomeJAKFAG000000000
SAMN20348584
2011Ycf849IV
GCA_023383425.1ChromosomeJAKFAC000000000
SAMN20348588
2012Y70195531III
GCA_023383415.1ChromosomeJAKEZZ000000000
SAMN20348597
2015Y70736253
GCA_023896195.1ChromosomeJAKFAI000000000
SAMN20348579
2011Ycf382III
GCA_023896175.1ChromosomeJAKFAH000000000
SAMN20348583
2011Ycf813VI
GCA_023896155.1ChromosomeJAKFAF000000000
SAMN20348585
2011YCF898V
GCA_023896075.1ChromosomeJAKEZY000000000
SAMN20348599
2016Y70864359II
GCA_023896055.1ChromosomeJAKEZV000000000
SAMN20348605
2017Y71030813
GCA_023896025.1ChromosomeJAKEZU000000000
SAMN20348606
2017Y71049494I
GCA_023896015.1ChromosomeJAKEZS000000000
SAMN20348611
2017Y71095519V
GCA_023895995.1ChromosomeJAKEZT000000000
SAMN20348610
2017Y71089647II
GCA_023896295.1ChromosomeJAKEZR000000000
SAMN20348613
2019Y71335858VI
GCA_023896255.1ChromosomeJAKFAM000000000
SAMN20348563
2004Ycf347
GCA_023896235.1ChromosomeJAKFAL000000000
SAMN20348564
2004Ycf882IX
GCA_023896855.1ChromosomeJAKEZX000000000
SAMN20348602
2017Y70937175
GCA_023896835.1ChromosomeJAKEZP000000000
SAMN20348618
2019Y71444840III
GCA_023924305.1ChromosomeJAKEZQ000000000
SAMN20348616
2019Y71432787IV
GCA_023924285.1ChromosomeJAKFAA000000000
SAMN20348595
2015Y70658433
GCA_023924265.1ChromosomeJAKEZO000000000
SAMN20348619
2019Y71450928III
GCA_023896115.1ChromosomeJAKFAB000000000
SAMN20348589
2014Y70425719
GCA_023895935.1ChromosomeJAKEZN000000000
SAMN20348621
2020Y71666954
GCA_023373725.1Complete genomeSAMN20348560
2003Ycf867
GCA_023896095.1ChromosomeJAKEZW000000000
SAMN20348604
2017Y70983955
GCA_023896135.1ChromosomeJAKFAE000000000
SAMN20348586
2011Ycf928II

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