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Accession: PRJNA727231 ID: 727231

Transposon sequencing for pathway-specific unipolar polysaccharide biosynthesis screen in Agrobacterium tumefaciens C58

See Genome Information for Agrobacterium fabrum
Performed en masse sequencing of transposon insertions among A. tumefaciens mutants deficient in unipolar polysaccharide (UPP) production in two different genetic backgrounds, each one specific for one of the two chemical species of UPP (UPPGlcN and UPPGalN) Overall design: Screening strains overproduce UPP polysaccharide due to elevated cyclic diguanylate monophosphate (cdGMP, because of deletion of pruA ATU_RS05580 regulator) and are also genetically disabled for production of multiple polysacccharides: cellulose, succinoglycan, Beta 1,2-glucans and Beta 1,3-glucans). More...
AccessionPRJNA727231; GEO: GSE173827
ScopeMultiisolate
OrganismAgrobacterium fabrum str. C58[Taxonomy ID: 176299]
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex; Agrobacterium fabrum; Agrobacterium fabrum str. C58
SubmissionRegistration date: 4-May-2021
425E, Biology, Indiana University
RelevanceUnknown
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments5
Other datasets
BioSample5
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1
SRA Data Details
ParameterValue
Data volume, Gbases1
Data volume, Mbytes431

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