This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA665212; GEO: GSE158430 |
| Type | Umbrella project |
| Publications | - Pan Z et al., "Pig genome functional annotation enhances the biological interpretation of complex traits and human disease.", Nat Commun, 2021 Oct 6;12(1):5848
- Kern C et al., "Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research.", Nat Commun, 2021 Mar 23;12(1):1821
|
| Submission | Registration date: 23-Sep-2020
UC Davis |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 334 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 334 |
| GEO DataSets | 9 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility encompasses the following 8 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 7 |
BioProject
accession | Name | Title |
|---|
| PRJNA665194 | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (ATAC-Seq) | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (ATAC-Seq) (UC Davis) | | PRJNA665197 | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (CTCF ChIP-Seq) | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (CTCF ChIP-Seq) (UC Davis) | | PRJNA665199 | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27ac ChIP-Seq) | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27ac ChIP-Seq) (UC Davis) | | PRJNA665209 | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27me3 ChIP-Seq) | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27me3 ChIP-Seq) (UC Davis) | | PRJNA665214 | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me1 ChIP-Seq) | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me1 ChIP-Seq) (UC Davis) |
List all 7 'Epigenomics' projects...BioProject
accession | Name | Title |
|---|
| PRJNA665194 | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (ATAC-Seq) | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (ATAC-Seq) (UC Davis) | | PRJNA665197 | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (CTCF ChIP-Seq) | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (CTCF ChIP-Seq) (UC Davis) | | PRJNA665199 | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27ac ChIP-Seq) | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27ac ChIP-Seq) (UC Davis) | | PRJNA665209 | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27me3 ChIP-Seq) | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27me3 ChIP-Seq) (UC Davis) | | PRJNA665214 | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me1 ChIP-Seq) | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me1 ChIP-Seq) (UC Davis) | | PRJNA665216 | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me3 ChIP-Seq) | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me3 ChIP-Seq) (UC Davis) | | PRJNA665196 | Gallus gallus | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (DNase-Hypersensitivity) (UC Davis) |
Less... |
| Transcriptome or Gene expression | 1 |
BioProject
accession | Name | Title |
|---|
| PRJNA665193 | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (RNA-Seq) | Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (RNA-Seq) (UC Davis) |
|