This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
The linked supplementary file includes:
sheet 1: patient information
sheet 2: Top-25 genes HCC atlas clusters
sheet 3: Top-25 genes T cell clusters
sheet 4: Top-25 genes NK cell clusters
sheet 5: Top-25 genes Fibroblast clusters
sheet 6: Top-25 genes Hepatocyte clusters
sheet 7: Garnett Markers-whole atlas
sheet 8: Top-25 genes MNC clusters
sheet 9: Top-25 genes Endothelial clusters
sheet 10: Garnett Markers-myeloid
sheet 11: Spatial Transcriptomics
| Accession | PRJNA658535; GEO: GSE156337 |
| Type | Umbrella project |
| Publications | Sharma A et al., "Onco-fetal Reprogramming of Endothelial Cells Drives Immunosuppressive Macrophages in Hepatocellular Carcinoma.", Cell, 2020 Oct 15;183(2):377-394.e21 |
| Submission | Registration date: 17-Aug-2020
Cancer Therapeutics and Stratified Oncology 5, Genome Institute Of Singapore |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 78 |
| Publications |
| PubMed | 1 |
| Other datasets |
| BioSample | 78 |
| GEO DataSets | 3 |
Onco-fetal reprogramming of endothelial cells drives immunosuppressive macrophages in Hepatocellular Carcinoma encompasses the following 2 sub-projects:
| Project Type | Number of Projects |
| Other | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA658540 | Homo sapiens | Onco-fetal reprogramming of endothelial cells drives immunosuppressive macrophages in Hepatocellular Carcinoma (Nanostring) (Cancer Therapeutics and Stratified...) |
|
| Transcriptome or Gene expression | 1 |
BioProject
accession | Name | Title |
|---|
| PRJNA658541 | Onco-fetal reprogramming of endothelial cells drives immunosuppressive macrophages in Hepatocellular Carcinoma (scRNA-seq) | Onco-fetal reprogramming of endothelial cells drives immunosuppressive macrophages in Hepatocellular Carcinoma (scRNA-seq) (Cancer Therapeutics and Stratified...) |
|