Bacteria (ID 658026) - BioProject

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Accession: PRJDB10427 ID: 658026

Bacteria

Whole genome sequencing of antimicrobial-resistant bacteria isolated from aquatic animals, plants, and environment in Asia

Antimicrobial-resistant bacteria are a serious threat to public health. In this study, we performed whole genome sequencing of antimicrobial-resistant bacteria isolated from aquatic animals, plants, and environment in Asia.

Accession	PRJDB10427
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Submission	Registration date: 18-Aug-2020 AMR Research Center, National Institute of Infectious Diseases

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	24164
WGS master	90
Genomic DNA	172
SRA Experiments	7
Protein Sequences	301632
Other datasets
BioSample	115
Assembly	107

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

20
87
107

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_021602685.1	BPPD00000000		SAMD00270047	KAM392	Acinetobacter sp. KAM392
GCA_021602705.1	BPPE00000000		SAMD00270048	KAM393	Acinetobacter sp. KAM393
GCA_021602725.1	BPPF00000000		SAMD00270049	KAM394	Acinetobacter sp. KAM394
GCA_021602745.1	BPPG00000000		SAMD00270050	KAM395	Acinetobacter sp. KAM395
GCA_021602765.1	BPPH00000000		SAMD00270051	KAM396	Acinetobacter sp. KAM396
GCA_021602785.1	BPPI00000000		SAMD00270052	KAM397	Acinetobacter sp. KAM397
GCA_021602805.1	BPPJ00000000		SAMD00270053	KAM398	Acinetobacter sp. KAM398
GCA_021602825.1	BPPK00000000		SAMD00270054	KAM399	Acinetobacter sp. KAM399
GCA_021602845.1	BPPL00000000		SAMD00270055	KAM400	Acinetobacter sp. KAM400
GCA_021602865.1	BPPM00000000		SAMD00270056	KAM401	Acinetobacter sp. KAM401
GCA_021602885.1	BPPN00000000		SAMD00270057	KAM402	Acinetobacter sp. KAM402
GCA_021603005.1	BPPO00000000		SAMD00270058	KAM403	Acinetobacter sp. KAM403
GCA_021603045.1	BPPP00000000		SAMD00270059	KAM404	Acinetobacter sp. KAM404
GCA_021603145.1	BPPQ00000000		SAMD00270060	KAM405	Acinetobacter sp. KAM405
GCA_021603185.1	BPPR00000000		SAMD00270061	KAM406	Acinetobacter sp. KAM406
GCA_040436385.1		6	SAMD00775682	PT23-B2	Acinetobacter towneri
GCA_036244575.1	BTRM00000000		SAMD00639566	NUITM-VRA1	Aerococcus viridans
GCA_021654375.1		1	SAMD00424815	NUITM-VA2	Aeromonas caviae
GCA_015508545.2		6	SAMD00254948	KAM329	Aeromonas caviae
GCA_016861425.1		8	SAMD00270046	KAM376	Aeromonas caviae
GCA_021654355.1		3	SAMD00424814	NUITM-VA1	Aeromonas hydrophila
GCA_014679585.1		10	SAMD00242552	KAM330	Aeromonas hydrophila
GCA_016861485.1		1	SAMD00270062	KAM426	Aquipseudomonas alcaligenes
GCA_019656635.1	BPMT00000000		SAMD00270072	KAM436	Aquipseudomonas alcaligenes
GCA_019656615.1	BPMS00000000		SAMD00270071	KAM435	Aquipseudomonas alcaligenes
GCA_019656595.1	BPMR00000000		SAMD00270070	KAM434	Aquipseudomonas alcaligenes
GCA_019656575.1	BPMQ00000000		SAMD00270068	KAM432	Aquipseudomonas alcaligenes
GCA_019656555.1	BPMP00000000		SAMD00270066	KAM430	Aquipseudomonas alcaligenes
GCA_019656535.1	BPMO00000000		SAMD00270065	KAM429	Aquipseudomonas alcaligenes
GCA_019656515.1	BPMN00000000		SAMD00270064	KAM428	Aquipseudomonas alcaligenes
GCA_019655655.1	BPFM00000000		SAMD00298538	NUITM-VC3	Citrobacter braakii
GCA_019655555.1	BPFL00000000		SAMD00298537	NUITM-VC2	Citrobacter freundii
GCA_019655495.1	BPFK00000000		SAMD00298536	NUITM-VC1	Citrobacter freundii
GCA_026012595.1	BRZZ00000000		SAMD00533730	NUITM-VRE2	Enterococcus faecium
GCA_025998395.1		8	SAMD00533729	NUITM-VRE1	Enterococcus faecium
GCA_036244495.1	BTSM00000000		SAMD00639562	NUITM-VRE33	Enterococcus faecium
GCA_036244475.1	BTSL00000000		SAMD00639561	NUITM-VRE32	Enterococcus faecium
GCA_036244455.1	BTSK00000000		SAMD00639560	NUITM-VRE31	Enterococcus faecium
GCA_036244435.1	BTSJ00000000		SAMD00639559	NUITM-VRE30	Enterococcus faecium
GCA_036244415.1	BTSH00000000		SAMD00639558	NUITM-VRE29	Enterococcus faecium
GCA_036244395.1	BTSG00000000		SAMD00639557	NUITM-VRE28	Enterococcus faecium
GCA_036244375.1	BTSF00000000		SAMD00639556	NUITM-VRE27	Enterococcus faecium
GCA_036244355.1	BTSE00000000		SAMD00639555	NUITM-VRE26	Enterococcus faecium
GCA_036244335.1	BTSD00000000		SAMD00639554	NUITM-VRE25	Enterococcus faecium
GCA_036244315.1	BTSC00000000		SAMD00639553	NUITM-VRE24	Enterococcus faecium
GCA_036244295.1	BTSB00000000		SAMD00639552	NUITM-VRE23	Enterococcus faecium
GCA_036244275.1	BTSA00000000		SAMD00639551	NUITM-VRE22	Enterococcus faecium
GCA_036244255.1	BTRZ00000000		SAMD00639550	NUITM-VRE21	Enterococcus faecium
GCA_036244235.1	BTRY00000000		SAMD00639549	NUITM-VRE20	Enterococcus faecium
GCA_036244215.1	BTRW00000000		SAMD00639548	NUITM-VRE19	Enterococcus faecium
GCA_036244195.1	BTRV00000000		SAMD00639547	NUITM-VRE18	Enterococcus faecium
GCA_036244175.1	BTRU00000000		SAMD00639546	NUITM-VRE17	Enterococcus faecium
GCA_036244155.1	BTRT00000000		SAMD00639545	NUITM-VRE16	Enterococcus faecium
GCA_036244135.1	BTRR00000000		SAMD00639543	NUITM-VRE14	Enterococcus faecium
GCA_036244115.1	BTRQ00000000		SAMD00639542	NUITM-VRE13	Enterococcus faecium
GCA_036244095.1	BTRP00000000		SAMD00639541	NUITM-VRE12	Enterococcus faecium
GCA_036244075.1	BTRO00000000		SAMD00639540	NUITM-VRE11	Enterococcus faecium
GCA_036244055.1	BTRN00000000		SAMD00639539	NUITM-VRE10	Enterococcus faecium
GCA_036244035.1	BTSW00000000		SAMD00639538	NUITM-VRE9	Enterococcus faecium
GCA_036244015.1	BTSV00000000		SAMD00639537	NUITM-VRE8	Enterococcus faecium
GCA_036243995.1	BTSU00000000		SAMD00639536	NUITM-VRE7	Enterococcus faecium
GCA_036243975.1	BTST00000000		SAMD00639535	NUITM-VRE6	Enterococcus faecium
GCA_036243955.1	BTSS00000000		SAMD00639534	NUITM-VRE5	Enterococcus faecium
GCA_036243935.1	BTSR00000000		SAMD00639533	NUITM-VRE4	Enterococcus faecium
GCA_036243915.1	BTSQ00000000		SAMD00639532	NUITM-VRE3	Enterococcus faecium
GCA_036244535.1	BTSO00000000		SAMD00639564	NUITM-VRE35	Enterococcus gallinarum
GCA_036244515.1	BTSN00000000		SAMD00639563	NUITM-VRE34	Enterococcus gallinarum
GCA_036244555.1	BTSP00000000		SAMD00639565	NUITM-VRE36	Enterococcus raffinosus
GCA_030162275.1	BSVY00000000		SAMD00587245	VE-V7-F	Escherichia coli
GCA_030162255.1	BSVX00000000		SAMD00587244	VE-V4-M	Escherichia coli
GCA_030162235.1	BSVW00000000		SAMD00587243	VE-V2-F	Escherichia coli
GCA_030162215.1	BSVV00000000		SAMD00587242	VE-V16-M	Escherichia coli
GCA_030162135.1	BSVR00000000		SAMD00587238	VE-T6	Escherichia coli
GCA_030162115.1	BSVQ00000000		SAMD00587237	VE-T5	Escherichia coli
GCA_030162095.1	BSVP00000000		SAMD00587236	VE-T3	Escherichia coli
GCA_030162055.1	BSVN00000000		SAMD00587234	VE-T11	Escherichia coli
GCA_030161995.1	BSVK00000000		SAMD00587231	VE-F4	Escherichia coli
GCA_030161975.1	BSVJ00000000		SAMD00587230	VE-F2	Escherichia coli
GCA_030161955.1	BSVI00000000		SAMD00587228	VE-F1	Escherichia coli
GCA_030162175.2		7	SAMD00587240	VE-V10-F	Escherichia coli
GCA_030162195.2		8	SAMD00587241	VE-V11-M	Escherichia coli
GCA_030162155.2		8	SAMD00587239	VE-T9	Escherichia coli
GCA_030162075.2		3	SAMD00587235	VE-T2	Escherichia coli
GCA_030162035.2		3	SAMD00587233	VE-T10	Escherichia coli
GCA_030162015.2		4	SAMD00587232	VE-F5	Escherichia coli
GCA_030161935.2		6	SAMD00587229	VE-F10	Escherichia coli
GCA_019655835.1	BPFU00000000		SAMD00298535	NUITM-VE8	Escherichia coli
GCA_019655815.1	BPFT00000000		SAMD00298534	NUITM-VE7	Escherichia coli
GCA_019655795.1	BPFS00000000		SAMD00298533	NUITM-VE6	Escherichia coli
GCA_019655775.1	BPFR00000000		SAMD00298532	NUITM-VE5	Escherichia coli
GCA_019655755.1	BPFQ00000000		SAMD00298531	NUITM-VE4	Escherichia coli
GCA_019655735.1	BPFP00000000		SAMD00298530	NUITM-VE3	Escherichia coli
GCA_019655715.1	BPFO00000000		SAMD00298529	NUITM-VE2	Escherichia coli
GCA_019655695.1	BPFN00000000		SAMD00298528	NUITM-VE1	Escherichia coli
GCA_019657165.1	BPFV00000000	1	SAMD00298539	NUITM-VK5	Klebsiella aerogenes
GCA_020522065.1	BPUY00000000	1	SAMD00396914	NUITM-VK2	Klebsiella pneumoniae
GCA_020521515.1	BPVD00000000		SAMD00396919	NUITM-VK12	Klebsiella quasipneumoniae
GCA_020521495.1	BPVA00000000		SAMD00396916	NUITM-VK9	Klebsiella quasipneumoniae
GCA_020522125.1	BPVC00000000	2	SAMD00396918	NUITM-VK11	Klebsiella quasipneumoniae
GCA_020522105.1	BPVB00000000	1	SAMD00396917	NUITM-VK10	Klebsiella quasipneumoniae
GCA_020522085.1	BPUZ00000000	1	SAMD00396915	NUITM-VK4	Klebsiella quasipneumoniae
GCA_025998255.1		3	SAMD00396921	NUITM-VP1	Proteus mirabilis
GCA_042848125.1		2	SAMD00792078	KNHN1	Pseudomonas guariconensis
GCA_019973635.1		5	SAMD00396920	NUITM-VR1	Raoultella ornithinolytica
GCA_026012575.1	BRZX00000000		SAMD00529479	NUITM-VS3	Shewanella xiamenensis
GCA_025998315.1		6	SAMD00529478	NUITM-VS2	Shewanella xiamenensis
GCA_019973655.1		3	SAMD00396922	NUITM-VS1	Shewanella xiamenensis

SRA Data Details

Parameter	Value
Data volume, Gbases	161
Data volume, Mbytes	43682

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Bacteria

Whole genome sequencing of antimicrobial-resistant bacteria isolated from aquatic animals, plants, and environment in Asia

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