ID 649220 - BioProject

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Accession: PRJNA649220 ID: 649220

Pectobacterium genome sequencing for pangenomics

Expand the set of available Pectobacterium genomes and the representation of agriculturally relevant strains. The genomes are used for a pangenomic investigation of the genus.

Accession	PRJNA649220
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 28-Jul-2020 Wageningen Plant Research
Related Resources	PanTools
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	63
WGS master	54
Genomic DNA	9
SRA Experiments	70
Protein Sequences	38503
Other datasets
BioSample	63
Assembly	63

Assembly details:

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Assembly level

Number of Assemblies

9
44
10
63

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_016949085.1	JACHAA000000000		SAMN15660286	NAK:467	Pectobacterium aquaticum
GCA_016944615.1		1	SAMN15660289	IPO:3649 NAK:375	Pectobacterium brasiliense
GCA_016944595.1		1	SAMN15660291	IPO:3710 NAK:380	Pectobacterium brasiliense
GCA_016944555.1		1	SAMN15660314	IPO:4057 NAK:249	Pectobacterium brasiliense
GCA_016944435.1		1	SAMN15660312	IPO:4060 NAK:251	Pectobacterium brasiliense
GCA_016944315.1		1	SAMN15660315	IPO:4062 NAK:237	Pectobacterium brasiliense
GCA_016944295.1		1	SAMN15660296	IPO:4065 NAK:223	Pectobacterium brasiliense
GCA_016944275.1		1	SAMN15660298	IPO:4071 NAK:240	Pectobacterium brasiliense
GCA_016944255.1		1	SAMN15660313	IPO:4132 NAK:239	Pectobacterium brasiliense
GCA_016944235.1		1	SAMN15660276	IPO:4134 NAK:395	Pectobacterium brasiliense
GCA_016950315.1	JACHAT000000000		SAMN15660328	IPO:0590	Pectobacterium brasiliense
GCA_016950285.1	JACGFP000000000		SAMN15660324	IPO:0821 SCRI:133	Pectobacterium brasiliense
GCA_016950125.1	JACGFI000000000		SAMN15660322	IPO:3843 JGAR:11	Pectobacterium brasiliense
GCA_016950085.1	JACGFF000000000		SAMN15660306	IPO:4064 NAK:242	Pectobacterium brasiliense
GCA_016950115.1	JACGFG000000000		SAMN15660297	IPO:4054 NAK:231	Pectobacterium brasiliense
GCA_016950075.1	JACGFH000000000		SAMN15660317	IPO:3844 NAK:382 JGAR:12	Pectobacterium brasiliense
GCA_016950015.1	JACGFE000000000		SAMN15660304	IPO:4067 NAK:257	Pectobacterium brasiliense
GCA_016949995.1	JACGFC000000000		SAMN15660295	IPO:4055 NAK:152 GBBC:1819	Pectobacterium brasiliense
GCA_016949975.1	JACGFD000000000		SAMN15660316	IPO:4068 NAK:256	Pectobacterium brasiliense
GCA_016950255.1	JACGFN000000000		SAMN15660329	IPO:3540 CFBP:6617 ATCC:BAA-417 IBSBF:1692	Pectobacterium brasiliense
GCA_016950225.1	JACGFL000000000		SAMN15660323	IPO:3643	Pectobacterium brasiliense
GCA_016950185.1	JACGFK000000000		SAMN15660327	IPO:3644	Pectobacterium brasiliense
GCA_016950195.1	JACGFM000000000		SAMN15660325	IPO:3628	Pectobacterium brasiliense
GCA_016950175.1	JACHAU000000000		SAMN15660326	IPO:3630	Pectobacterium brasiliense
GCA_016949915.1	JACHAQ000000000		SAMN15660305	IPO:4058 NAK:235	Pectobacterium brasiliense
GCA_016949885.1	JACHAP000000000		SAMN15660299	NAK:241	Pectobacterium brasiliense
GCA_016949875.1	JACGFA000000000		SAMN15660302	NAK:247	Pectobacterium brasiliense
GCA_016949855.1	JACGFB000000000		SAMN15660301	NAK:245	Pectobacterium brasiliense
GCA_016949835.1	JACHAO000000000		SAMN15660300	NAK:243	Pectobacterium brasiliense
GCA_016949795.1	JACGEZ000000000		SAMN15660307	IPO:4073 NAK:248	Pectobacterium brasiliense
GCA_016949775.1	JACHAN000000000		SAMN15660303	NAK:250	Pectobacterium brasiliense
GCA_016949735.1	JACGEY000000000		SAMN15660308	NAK:252	Pectobacterium brasiliense
GCA_016949055.1	JACGEN000000000		SAMN15660287	NAK:468	Pectobacterium brasiliense
GCA_016949705.1	JACHAM000000000		SAMN15660310	NAK:254	Pectobacterium brasiliense
GCA_016949655.1	JACHAL000000000		SAMN15660311	IPO:4066 NAK:259	Pectobacterium brasiliense
GCA_016949595.1	JACHAJ000000000		SAMN15660292	IPO:3707 NAK:377 77a	Pectobacterium brasiliense
GCA_016949545.1	JACHAI000000000		SAMN15660293	IPO:3708 NAK:378 99a	Pectobacterium brasiliense
GCA_016949525.1	JACHAK000000000		SAMN15660290	IPO:3650 NAK:376	Pectobacterium brasiliense
GCA_016949515.1	JACGEW000000000		SAMN15660278	IPO:4056 NAK:264 GBBC:1756	Pectobacterium brasiliense
GCA_016949435.1	JACHAH000000000		SAMN15660294	IPO:3709 NAK:379 112-1c	Pectobacterium brasiliense
GCA_016949375.1	JACGEV000000000		SAMN15660321	IPO:3711 NAK:381	Pectobacterium brasiliense
GCA_016949355.1	JACGET000000000		SAMN15660271	NAK:384	Pectobacterium brasiliense
GCA_016949345.1	JACHAG000000000		SAMN15660272	NAK:385	Pectobacterium brasiliense
GCA_016949335.1	JACGEU000000000		SAMN15660275	IPO:4135 NAK:383	Pectobacterium brasiliense
GCA_016949315.1	JACHAF000000000		SAMN15660274	NAK:397	Pectobacterium brasiliense
GCA_016949295.1	JACGES000000000		SAMN15660273	NAK:396	Pectobacterium brasiliense
GCA_016949275.1	JACGEQ000000000		SAMN15660280	NAK:431	Pectobacterium brasiliense
GCA_016949255.1	JACGER000000000		SAMN15660277	IPO:4131 NAK:399 JGAR:16 180717-4	Pectobacterium brasiliense
GCA_016949235.1	JACHAE000000000		SAMN15660279	NAK:430	Pectobacterium brasiliense
GCA_016949215.1	JACGEP000000000		SAMN15660282	NAK:433	Pectobacterium brasiliense
GCA_016949195.1	JACHAC000000000		SAMN15660284	NAK:435	Pectobacterium brasiliense
GCA_016949155.1	JACHAB000000000		SAMN15660285	NAK:466	Pectobacterium brasiliense
GCA_016949145.1	JACHAD000000000		SAMN15660281	NAK:432	Pectobacterium brasiliense
GCA_016949135.1	JACGEO000000000		SAMN15660283	NAK:434	Pectobacterium brasiliense
GCA_016949095.1	JACGZZ000000000		SAMN15660288	NAK:470	Pectobacterium brasiliense
GCA_016988595.1	JACGZY000000000		SAMN15660330	IPO:3649 NAK:55	Pectobacterium brasiliense
GCA_016950275.1	JACGFO000000000		SAMN15660320	IPO:1955	Pectobacterium parmentieri
GCA_016949935.1	JACHAS000000000		SAMN15660331	NAK:226	Pectobacterium polaris
GCA_016949695.1	JACGEX000000000		SAMN15660309	IPO:4059 NAK:253	Pectobacterium polaris
GCA_016950155.1	JACGFJ000000000		SAMN15660270	IPO:3715 SV1490b	Pectobacterium punjabense
GCA_016949955.1	JACHAR000000000		SAMN15660332	NAK:227	Pectobacterium versatile
GCA_016949035.1	JACGEM000000000		SAMN15660319	NAK:94 PCC:163	Pectobacterium versatile
GCA_016949075.1	JACGZX000000000		SAMN15660318	IPO:0139 NAK:93 PCC:139	Pectobacterium versatile

SRA Data Details

Parameter	Value
Data volume, Gbases	196
Data volume, Mbytes	64390

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Pectobacterium genome sequencing for pangenomics

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