ID 646947 - BioProject

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Accession: PRJNA646947 ID: 646947

Comparative genomics of mycobacteria

Genome sequencing (resequencing), assembly, and phylogenetic analysis of rapid and slow-growing mycobacteria to understand the evolution of the genus Mycobacterium.

Accession	PRJNA646947
Data Type	Genome sequencing
Scope	Multispecies
Publications	Behra PRK et al., "Comparative genome analysis of mycobacteria focusing on tRNA and non-coding RNA.", BMC Genomics, 2022 Oct 15;23(1):704
Submission	Registration date: 17-Jul-2020 Uppsala University
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	113
WGS master	110
Genomic DNA	3
Protein Sequences	16058
Publications
PubMed	1
PMC	1
Other datasets
BioSample	116
Assembly	113

Assembly details:

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Assembly level

Number of Assemblies

3
82
28
113

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_025823205.1	JACKVH000000000		SAMN15568921	CCUG 55640	Mycobacterium alsense
GCA_025822405.1	JACKTS000000000		SAMN15568962	DSM 45057	Mycobacterium angelicum
GCA_025822765.1	JACKUK000000000		SAMN15568944	CCUG 50398	Mycobacterium barrassiae
GCA_025821915.1	JACKSV000000000		SAMN15568985	DSM 44277	Mycobacterium bohemicum
GCA_025822125.1	JACKTG000000000		SAMN15568974	DSM 45439	Mycobacterium bouchedurhonense
GCA_025821955.1	JACKSX000000000		SAMN15568983	DSM 45746	Mycobacterium bourgelatii
GCA_025822465.1	JACKTX000000000		SAMN15568957	DSM 44624	Mycobacterium branderi
GCA_025821765.1	JACKSP000000000		SAMN15568991	DSM 44136	Mycobacterium conspicuum
GCA_025822925.1	JACKUP000000000		SAMN15568939	DSM 43922	Mycobacterium cookii
GCA_025823305.1	JACKVN000000000		SAMN15568915	DSM 44852	Mycobacterium florentinum
GCA_025823245.1	JACKVI000000000		SAMN15568920	DSM 45731	Mycobacterium fragae
GCA_025821905.1	JACKSU000000000		SAMN15568986	DSM 44160	Mycobacterium gordonae
GCA_025822555.1	JACKUC000000000		SAMN15568952	DSM 44833	Mycobacterium hackensackense
GCA_025823035.1	JACKVB000000000		SAMN15568927	DSM 44634	Mycobacterium haemophilum DSM 44634
GCA_025822025.1	JACKTA000000000		SAMN15568980	DSM 44428	Mycobacterium heckeshornense
GCA_025821945.1	JACKSW000000000		SAMN15568984	DSM 44471	Mycobacterium heidelbergense
GCA_025821415.1	JACKRX000000000		SAMN15569009	DSM 44064	Mycobacterium interjectum
GCA_025822065.1	JACKTC000000000		SAMN15568978	DSM 44049	Mycobacterium intermedium
GCA_025822785.1	JACKUM000000000		SAMN15568942	DSM 44623	Mycobacterium intracellulare subsp. chimaera
GCA_025821825.1	JACKSR000000000		SAMN15568989	DSM 44627	Mycobacterium kubicae
GCA_025821645.1	JACKSI000000000		SAMN15568998	DSM 44577	Mycobacterium lacus
GCA_022558505.1		1	SAMN15569027	DSM 44163	Mycobacterium malmoense
GCA_025822645.1	JACKUF000000000		SAMN15568949	DSM 45255	Mycobacterium mantenii
GCA_025823125.1	JACKVF000000000		SAMN15568923	DSM 45437	Mycobacterium marseillense
GCA_025823255.1	JACKVL000000000		SAMN15568917	DSM 44602	Mycobacterium montefiorense
GCA_025821845.1	JACKSS000000000		SAMN15568988	DSM 44803	Mycobacterium nebraskense
GCA_025821305.1	JACKRQ000000000		SAMN15569016	DSM 45145	Mycobacterium noviomagense
GCA_025821485.1	JACKRZ000000000		SAMN15569007	DSM 44572	Mycobacterium palustre
GCA_025823385.1	JACKVQ000000000		SAMN15568912	DSM 46749	Mycobacterium paraense
GCA_025822865.1	JACKUR000000000		SAMN15568937	DSM 44181	Mycobacterium paraffinicum
GCA_025823155.1	JACKVE000000000		SAMN15568924	DSM 45000	Mycobacterium paraseoulense
GCA_025822965.1	JACKUX000000000		SAMN15568931	DSM 44553	Mycobacterium parmense
GCA_025821505.1	JACKSB000000000		SAMN15569005	DSM 45108	Mycobacterium pseudoshottsii
GCA_025821735.1	JACKSL000000000		SAMN15568995	DSM 45176	Mycobacterium riyadhense
GCA_025821405.1	JACKRS000000000		SAMN15569014	DSM 44616	Mycobacterium saskatchewanense
GCA_025821325.1	JACKRR000000000		SAMN15569015	DSM 43992	Mycobacterium scrofulaceum
GCA_025823355.1	JACKVP000000000		SAMN15568913	DSM 44998	Mycobacterium seoulense
GCA_025822045.1	JACKTB000000000		SAMN15568979	DSM 45441	Mycobacterium sherrisii
GCA_025822885.1	JACKUN000000000		SAMN15568941	DSM 44152	Mycobacterium shimoidei
GCA_025822285.1	JACKTO000000000		SAMN15568966	DSM 45663	Mycobacterium shinjukuense
GCA_025821785.1	JACKSO000000000		SAMN15568992	DSM 45059	Mycobacterium stomatepiae
GCA_025821385.1	JACKRU000000000		SAMN15569012	DSM 44166	Mycobacterium szulgai
GCA_025821985.1	JACKSY000000000		SAMN15568982	CCUG 56329	Mycobacterium timonense
GCA_025822665.1	JACKUG000000000		SAMN15568948	CCUG 37460	Mycobacterium tuberculosis variant bovis
GCA_025823185.1	JACKVK000000000		SAMN15568918	DSM 44838	Mycobacterium yunnanensis
GCA_025822945.1	JACKUV000000000		SAMN15568933	DSM 45595	Mycobacteroides immunogenum
GCA_025822715.1	JACKUI000000000		SAMN15568946	DSM 45576	Mycolicibacillus koreensis
GCA_025822825.1	JACKUQ000000000		SAMN15568938	DSM 45575	Mycolicibacillus parakoreensis
GCA_025821865.1	JACKSN000000000		SAMN15568993	DSM 44153	Mycolicibacillus trivialis
GCA_025821685.1	JACKSG000000000		SAMN15569000	DSM 45454	Mycolicibacter algericus DSM 45454
GCA_025822685.1	JACKUJ000000000		SAMN15568945	DSM 44942	Mycolicibacter arupensis
GCA_025821605.1	JACKSF000000000		SAMN15569001	DSM 44241	Mycolicibacter hiberniae
GCA_025823135.1	JACKVG000000000		SAMN15568922	DSM 45394	Mycolicibacter longobardus
GCA_025821425.1	JACKRY000000000		SAMN15569008	DSM 45633	Mycolicibacter minnesotensis
GCA_025821265.1	JACKRP000000000		SAMN15569017	DSM 44164	Mycolicibacter nonchromogenicus
GCA_025822005.1	JACKSZ000000000		SAMN15568981	DSM 43227	Mycolicibacter terrae
GCA_025822215.1	JACKTJ000000000		SAMN15568971	DSM 44147	Mycolicibacterium aichiense
GCA_025822365.1	JACKTN000000000		SAMN15568967	CCUG 37585	Mycolicibacterium alvei
GCA_025823225.1	JACKVD000000000		SAMN15568925	DSM 45768	Mycolicibacterium arabiense
GCA_025821345.1	JACKRV000000000		SAMN15569011	DSM 43999	Mycolicibacterium aurum
GCA_025823285.1	JACKVM000000000		SAMN15568916	DSM 45578	Mycolicibacterium bacteremicum
GCA_022558525.1		1	SAMN15569026	DSM 44677	Mycolicibacterium boenickei
GCA_025822265.1	JACKTM000000000		SAMN15568968	DSM 44680	Mycolicibacterium brisbanense
GCA_025822525.1	JACKTW000000000		SAMN15568958	DSM 44177	Mycolicibacterium brumae
GCA_025822345.1	JACKTQ000000000		SAMN15568964	DSM 44828	Mycolicibacterium canariasense
GCA_025822625.1	JACKUE000000000		SAMN15568950	DSM 46765	Mycolicibacterium celeriflavum
GCA_025821725.1	JACKSM000000000		SAMN15568994	DSM 44633	Mycolicibacterium chitae
GCA_025823065.1	JACKVA000000000		SAMN15568928	DSM 45102	Mycolicibacterium conceptionense
GCA_025822845.1	JACKUS000000000		SAMN15568936	DSM 44017	Mycolicibacterium confluentis
GCA_025822435.1	JACKTV000000000		SAMN15568959	DSM 45433	Mycolicibacterium crocinum
GCA_025822385.1	JACKTT000000000		SAMN15568961	DSM 43524	Mycolicibacterium diernhoferi
GCA_025822585.1	JACKUD000000000		SAMN15568951	CCUG 46352	Mycolicibacterium doricum
GCA_025823005.1	JACKUY000000000		SAMN15568930	DSM 44244	Mycolicibacterium duvalii
GCA_025822495.1	JACKTZ000000000		SAMN15568955	DSM 44368	Mycolicibacterium elephantis
GCA_025821465.1	JACKRW000000000		SAMN15569010	DSM 44179	Mycolicibacterium fallax
GCA_025821245.1	JACKRO000000000		SAMN15569018	DSM 43637	Mycolicibacterium farcinogenes
GCA_025822705.1	JACKUL000000000		SAMN15568943	DSM 43991	Mycolicibacterium flavescens
GCA_025823075.1	JACKUU000000000		SAMN15568934	DSM 44556	Mycolicibacterium fluoranthenivorans
GCA_025822205.1	JACKTK000000000		SAMN15568970	DSM 44220	Mycolicibacterium fortuitum
GCA_025822145.1	JACKTH000000000		SAMN15568973	DSM 45364	Mycolicibacterium frederiksbergense
GCA_025821365.1	JACKRT000000000		SAMN15569013	DSM 44077	Mycolicibacterium gadium
GCA_025821885.1	JACKST000000000		SAMN15568987	DSM 45363	Mycolicibacterium gilvum
GCA_025822535.1	JACKUB000000000		SAMN15568953	CCUG 58730	Mycolicibacterium goodii
GCA_025821585.1	JACKSE000000000		SAMN15569002	DSM 45391	Mycolicibacterium hippocampi
GCA_025822245.1	JACKTL000000000		SAMN15568969	DSM 44183	Mycolicibacterium hodleri
GCA_022558565.1		1	SAMN15569023	DSM 44478	Mycolicibacterium holsaticum DSM 44478 = JCM 12374
GCA_025823315.1	JACKVJ000000000		SAMN15568919	DSM 44676	Mycolicibacterium houstonense
GCA_025821225.1	JACKRM000000000		SAMN15569020	DSM 45132	Mycolicibacterium insubricum
GCA_025822605.1	JACKTY000000000		SAMN15568956	DSM 44078	Mycolicibacterium komossense
GCA_025823345.1	JACKVO000000000		SAMN15568914	DSM 45785	Mycolicibacterium litorale
GCA_025822085.1	JACKTE000000000		SAMN15568976	DSM 45167	Mycolicibacterium madagascariense
GCA_025822185.1	JACKTD000000000		SAMN15568977	DSM 44221	Mycolicibacterium moriokaense
GCA_025822305.1	JACKTP000000000		SAMN15568965	DSM 44340	Mycolicibacterium murale
GCA_025823025.1	JACKUZ000000000		SAMN15568929	DSM 44679	Mycolicibacterium neworleansense
GCA_025822165.1	JACKTI000000000		SAMN15568972	DSM 44203	Mycolicibacterium novocastrense
GCA_025822425.1	JACKTU000000000		SAMN15568960	DSM 43271	Mycolicibacterium peregrinum
GCA_025823105.1	JACKVC000000000		SAMN15568926	DSM 44242	Mycolicibacterium porcinum
GCA_025822745.1	JACKUH000000000		SAMN15568947	DSM 44585	Mycolicibacterium poriferae
GCA_025821805.1	JACKSQ000000000		SAMN15568990	DSM 44697	Mycolicibacterium psychrotolerans
GCA_025822105.1	JACKTF000000000		SAMN15568975	DSM 44222	Mycolicibacterium pulveris
GCA_025821625.1	JACKSH000000000		SAMN15568999	DSM 44605	Mycolicibacterium pyrenivorans
GCA_025822805.1	JACKUO000000000		SAMN15568940	DSM 44223	Mycolicibacterium rhodesiae
GCA_025821255.1	JACKRN000000000		SAMN15569019	DSM 45406	Mycolicibacterium rufum
GCA_025822985.1	JACKUW000000000		SAMN15568932	DSM 45643	Mycolicibacterium sediminis
GCA_025822895.1	JACKUT000000000		SAMN15568935	DSM 43656	Mycolicibacterium senegalense
GCA_025821545.1	JACKSA000000000		SAMN15569006	DSM 45070	Mycolicibacterium setense
GCA_025821515.1	JACKSC000000000		SAMN15569004	DSM 44076	Mycolicibacterium sphagni
GCA_025822325.1	JACKTR000000000		SAMN15568963	DSM 44167	Mycolicibacterium thermoresistibile
GCA_025821705.1	JACKSK000000000		SAMN15568996	DSM 44635	Mycolicibacterium tokaiense
GCA_025821205.1	JACKRL000000000		SAMN15569021	DSM 43292	Mycolicibacterium vaccae
GCA_025821565.1	JACKSD000000000		SAMN15569003	DSM 7251	Mycolicibacterium vanbaalenii PYR-1
GCA_025822475.1	JACKUA000000000		SAMN15568954	CCUG 47168	Mycolicibacterium wolinskyi
GCA_025821665.1	JACKSJ000000000		SAMN15568997	DSM 44615	[Mycobacterium] manitobense

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Comparative genomics of mycobacteria

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