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Genome Information for Lemur catta
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The ring-tailed lemur (Lemur cata) is primate that like other lemurs is endemic to Madagascar. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with Pacific long reads, Bionano optical maps, and 10X Genomics libraries at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by the Bettina Haase and Marcela Uliano-Silva, and supervised by Arang Rhie, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Coordination and funding was done by Tomas Marques-Bonet. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562215 |
| Type | Umbrella project |
| Organism | Lemur catta[Taxonomy ID: 9447] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Lemuridae; Lemur; Lemur catta |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 56128 |
| WGS master | 2 |
| Transcript | 55883 |
| SRA Experiments | 53 |
| Protein Sequences | 45141 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA561949 | Chromosomes | Lemur catta | Lemur catta (Ring-tailed lemur) genome, mLemCat1, primary haplotype (Vertebrate Genomes Project) | | PRJNA561950 | Scaffolds | Lemur catta | Lemur catta (Ring-tailed lemur) genome, mLemCat1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA779062 | Chromosomes | Lemur catta | Lemur catta isolate:mLemCat1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1008634 | SRA or Trace | Lemur catta (Ring-tailed lemur) genome, mLemCat1, sequence data | Lemur catta (Ring-tailed lemur) genome, mLemCat1, sequence data (G10K) |
|