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Genome Information for Chelmon rostratus
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The Copperband butterflyfish (Chelmon rostratus) is found Pacific and Indian Oceans reefs. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with Pacific long reads, Bionano optical maps, 10X Genomics libraries, Arima Genomics HiC, and Illumina short reads at the Max Planck Institute in Dresden led by Gene Myers group. Genome assembly was conducted by Martin Pippel, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Funding was raised by Gene Myers. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562194 |
| Type | Umbrella project |
| Organism | Chelmon rostratus[Taxonomy ID: 109905] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Chaetodontiformes; Chaetodontidae; Chelmon; Chelmon rostratus |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 35357 |
| WGS master | 2 |
| Transcript | 35278 |
| Protein Sequences | 33899 |
| Publications |
| PubMed | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds Total |
2
1
3
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJNA561969 | Chromosomes | Chelmon rostratus | Chelmon rostratus (copperband butterflyfish) genome, fCheRos1, primary haplotype (Vertebrate Genomes Project) | | PRJNA561970 | Scaffolds | Chelmon rostratus | Chelmon rostratus (copperband butterflyfish) genome, fCheRos1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA734320 | Chromosomes | Chelmon rostratus | Chelmon rostratus isolate:fCheRos1 RefSeq Genome sequencing and assembly (NCBI) |
|