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Genome Information for Callithrix jacchus
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The common marmoset (Callithrix jacchus) is a small, social monkey native to Brazil. With numerous attributes making it advantageous to study in the laboratory, the marmoset has become a prominent model in biomedical research. Sponsored by Guojie Zhang of the University of Copenhagen, a trio of samples were collected from a male juvenile and its parents by Stephanie Marcus of Erich Jarvis’ Lab in the colony of the Winrich Freiwald Lab at The Rockefeller University, and were used to generate a high-quality reference genome as part of the G10K-VGP.
| Accession | PRJNA560230 |
| Type | Umbrella project |
| Organism | Callithrix jacchus[Taxonomy ID: 9483] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix; Callithrix jacchus |
| Submission | Registration date: 14-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 105519 |
| WGS master | 3 |
| Transcript | 104188 |
| SRA Experiments | 40 |
| Protein Sequences | 83154 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 1 |
| Assembly | 3 |
Callithrix jacchus encompasses the following 5 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes SRA or Trace Total |
4
1
5
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA558086 | Chromosomes | Callithrix jacchus | Callithrix jacchus (common marmoset) Genome , mCalJac1, maternal haplotype (Vertebrate Genomes Project) | | PRJNA558087 | Chromosomes | Callithrix jacchus | Callithrix jacchus (common marmoset) Genome , mCalJac1, paternal haplotype (Vertebrate Genomes Project) | | PRJNA597600 | Chromosomes | Callithrix jacchus | Callithrix jacchus (common marmoset) genome, mCalJac1, paternal haplotype + X (Vertebrate Genomes Project) | | PRJNA939228 | Chromosomes | Callithrix jacchus | Callithrix jacchus isolate:mCalJac1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1008611 | SRA or Trace | Callithrix jacchus (common marmoset) Genome , mCalJac1, sequence data | Callithrix jacchus (common marmoset) Genome , mCalJac1, sequence data (G10K) |
|