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Accession: PRJNA543274 ID: 543274

Klebsiella

Klebsiella Genome sequencing and assembly

Sequencing of clinically important Klebsiella spp.
AccessionPRJNA543274
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismKlebsiella[Taxonomy ID: 570]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella
PublicationsCuénod A et al., "Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study.", Genome Med, 2021 Sep 13;13(1):150
SubmissionRegistration date: 24-Nov-2020
University of Basel
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)261
SRA Experiments272
Publications
PubMed1
PMC1
Other datasets
BioSample262
Assembly261
Assembly details:
Assembly levelNumber of Assemblies
32
229
261
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_015679435.1ContigVNVB00000000SAMN12212322
717657-17
GCA_031316335.1ContigVLPT00000000SAMN12273338
2017E043892A
GCA_020115715.1ContigVNVV00000000SAMN12212310
804720-15
GCA_020116495.1ContigVNUW00000000SAMN12212288
712486-17
GCA_020117115.1ContigVNTY00000000SAMN12212264
705420-17
GCA_020116755.1ContigVNUP00000000SAMN12212281
710322-17
GCA_020116695.1ContigVNUQ00000000SAMN12212282
710455-17
GCA_020118875.1ContigVNQW00000000SAMN12212208
502310-17
GCA_020118535.1ContigVNRE00000000SAMN12212216
502988-17
GCA_020118435.1ScaffoldVNRK00000000SAMN12212222
605112-17
GCA_020118395.1ContigVNRO00000000SAMN12212226
606641-17
GCA_020118015.1ContigVNSG00000000SAMN12212068
620206143210
GCA_020117975.1ContigVNSH00000000SAMN12212243
620255534809-17
GCA_020117965.1ContigVNSI00000000SAMN12212069
620256532320
GCA_020117935.1ContigVNSK00000000SAMN12212071
620257851413
GCA_020117915.1ContigVNSL00000000SAMN12212072
620258715808
GCA_020117895.1ContigVNSP00000000SAMN12212075
620262140113
GCA_020117855.1ContigVNSM00000000SAMN12212244
620259814713-17
GCA_020117835.1ContigVNSO00000000SAMN12212074
620260661315
GCA_020117755.1ContigVNST00000000SAMN12212079
620262936017
GCA_020117635.1ContigVNSY00000000SAMN12212245
620271411010-17
GCA_020117615.1ContigVNTA00000000SAMN12212246
620273821510-17
GCA_020117575.1ContigVNTD00000000SAMN12212087
620279031217
GCA_020117435.1ContigVNTJ00000000SAMN12212248
700466-17
GCA_020120815.1ContigVNNQ00000000SAMN12212124
170079723-17
GCA_020120855.1ContigVNNO00000000SAMN12212122
170067317-17
GCA_020120845.1ScaffoldVNNR00000000SAMN12212125
170096690-17
GCA_020120615.1ContigVNOB00000000SAMN12212135
40-2021-2
GCA_020119035.1ContigVNQS00000000SAMN12212204
500013-17
GCA_020119895.1ContigVNPM00000000SAMN12212172
402496-14
GCA_020119845.1ContigVNPO00000000SAMN12212174
402620-12
GCA_020120175.1ContigVNOX00000000SAMN12212157
401153-17
GCA_020118955.1ContigVNQT00000000SAMN12212205
500137-17
GCA_020119055.1ScaffoldVNQR00000000SAMN12212203
44-2360-1
GCA_020120585.1ContigVNOC00000000SAMN12212136
400041-17
GCA_020120895.1ScaffoldVNNP00000000SAMN12212123
170070391-17
GCA_020121285.1ContigVNMR00000000SAMN12212099
111734-17
GCA_020121115.1ContigVNMX00000000SAMN12212105
126192-17
GCA_020121095.1ContigVNMZ00000000SAMN12212107
128489-17
GCA_020121435.1ContigVNMN00000000SAMN12212095
109680-17
GCA_020117545.1ScaffoldVNTF00000000SAMN12212089
620286429714
GCA_020117535.1ContigVNTC00000000SAMN12212086
620278998915
GCA_020117515.1ContigVNTE00000000SAMN12212088
620285505921
GCA_020117475.1ContigVNTH00000000SAMN12212091
620288768518
GCA_020117465.1ContigVNTG00000000SAMN12212090
620286643710
GCA_020117595.1ContigVNTB00000000SAMN12212085
620277132808
GCA_020118055.1ContigVNSC00000000SAMN12212240
612478-16
GCA_020118035.1ScaffoldVNSF00000000SAMN12212067
620203084113
GCA_020117735.1ContigVNSV00000000SAMN12212081
620264432508
GCA_020117715.1ContigVNSU00000000SAMN12212080
620263865211
GCA_020117695.1ContigVNSW00000000SAMN12212082
620267298408
GCA_020117665.1ContigVNSZ00000000SAMN12212084
620272244309
GCA_020117655.1ContigVNSX00000000SAMN12212083
620267602911
GCA_020117815.1ContigVNSQ00000000SAMN12212076
620262455609
GCA_020117795.1ContigVNSS00000000SAMN12212078
620262927814
GCA_020117775.1ContigVNSR00000000SAMN12212077
620262583611
GCA_020117865.1ContigVNSN00000000SAMN12212073
620260277613
GCA_020117955.1ContigVNSJ00000000SAMN12212070
620256896681
GCA_020118455.1ContigVNRJ00000000SAMN12212221
603572-17
GCA_020118365.1ContigVNRP00000000SAMN12212227
607815-17
GCA_020118235.1ContigVNRT00000000SAMN12212231
608288-17
GCA_020118415.1ScaffoldVNRM00000000SAMN12212224
605924-17
GCA_020118495.1ContigVNRI00000000SAMN12212220
602734-17
GCA_020118815.1ContigVNQX00000000SAMN12212209
502565-17
GCA_020118665.1ContigVNRC00000000SAMN12212214
502790-17
GCA_020118655.1ContigVNRB00000000SAMN12212213
502761-17
GCA_020118915.1ContigVNQV00000000SAMN12212207
501671-17
GCA_020118555.1ContigVNRG00000000SAMN12212218
505106-17
GCA_020117095.1ContigVNUA00000000SAMN12212266
705823-17
GCA_020117075.1ContigVNUB00000000SAMN12212267
705849-17
GCA_020117015.1ContigVNUD00000000SAMN12212269
706508-16
GCA_020116995.1ScaffoldVNUE00000000SAMN12212270
707021-17
GCA_020116955.1ContigVNUI00000000SAMN12212274
708990-17
GCA_020116935.1ContigVNUF00000000SAMN12212271
707154-17
GCA_020116815.1ContigVNUO00000000SAMN12212280
710217-17
GCA_020116315.1ScaffoldVNVF00000000SAMN12212295
720807-16
GCA_020115525.1ContigVNWI00000000SAMN12212321
DSM 103279
GCA_020116215.1ContigVNVI00000000SAMN12212298
800126-16
GCA_020115135.1ContigVNNN00000000SAMN12212121
141125-16
GCA_015679365.1ContigVNOT00000000SAMN12212153
401065-17
GCA_015679345.1ScaffoldVNNJ00000000SAMN12212117
132656-17
GCA_015679305.1ScaffoldVNUH00000000SAMN12212273
708776-17
GCA_020115535.1ContigVNWH00000000SAMN12212320
DSM 5175
GCA_020116275.1ContigVNVG00000000SAMN12212296
722058-16
GCA_020116385.1ContigVNVA00000000SAMN12212292
713490-17
GCA_020116545.1ContigVNUX00000000SAMN12212289
712881-17
GCA_020116375.1ContigVNUZ00000000SAMN12212291
713447-17
GCA_020116585.1ScaffoldVNUV00000000SAMN12212287
711469-2009
GCA_020116575.1ContigVNUU00000000SAMN12212286
711206-17
GCA_020116975.1ContigVNUG00000000SAMN12212272
708712-17
GCA_020117055.1ContigVNTZ00000000SAMN12212265
705729-17
GCA_020117035.1ContigVNUC00000000SAMN12212268
706127-17
GCA_020116675.1ContigVNUS00000000SAMN12212284
711080-17
GCA_020116635.1ContigVNUR00000000SAMN12212283
711072-17
GCA_020116615.1ContigVNUT00000000SAMN12212285
711093-17
GCA_020116915.1ContigVNUJ00000000SAMN12212275
708994-2009
GCA_020116885.1ContigVNUM00000000SAMN12212278
709833-17
GCA_020116875.1ContigVNUK00000000SAMN12212276
709081-17
GCA_020116855.1ContigVNUL00000000SAMN12212277
709253-17
GCA_020116835.1ContigVNUN00000000SAMN12212279
709965-17
GCA_020118595.1ContigVNRD00000000SAMN12212215
502954-17
GCA_020118785.1ContigVNQZ00000000SAMN12212211
502610-17
GCA_020118775.1ContigVNQY00000000SAMN12212210
502573-2009
GCA_020118355.1ContigVNRN00000000SAMN12212225
606250-17
GCA_020118215.1ContigVNRW00000000SAMN12212234
608668-17
GCA_020118195.1ContigVNRX00000000SAMN12212235
608715-17
GCA_020118315.1ContigVNRR00000000SAMN12212229
608110-17
GCA_020118275.1ContigVNRV00000000SAMN12212233
608431-17
GCA_020118135.1ContigVNRZ00000000SAMN12212237
608815-17
GCA_020117455.1ContigVNTI00000000SAMN12212247
700456-16
GCA_020117355.1ContigVNTM00000000SAMN12212252
700570-17
GCA_020117225.1ContigVNTS00000000SAMN12212258
701520-2009
GCA_020117275.1ContigVNTQ00000000SAMN12212256
700765-17
GCA_020120535.1ContigVNOD00000000SAMN12212137
400086-17
GCA_020120515.1ScaffoldVNOE00000000SAMN12212138
400125-17
GCA_020119115.1ScaffoldVNQQ00000000SAMN12212202
404821-16
GCA_020119125.1ContigVNQO00000000SAMN12212200
404813-5-17
GCA_020119205.1ContigVNQK00000000SAMN12212196
404430-16
GCA_020119195.1ContigVNQJ00000000SAMN12212195
404387-16
GCA_020119175.1ContigVNQM00000000SAMN12212198
404507-16
GCA_020119155.1ContigVNQN00000000SAMN12212199
404556-16
GCA_020118925.1ContigVNQU00000000SAMN12212206
501326-11
GCA_020119675.1ContigVNPX00000000SAMN12212183
403161-15
GCA_020119645.1ContigVNPZ00000000SAMN12212185
403420-11
GCA_020119635.1ContigVNPY00000000SAMN12212184
403243-11
GCA_020119605.1ContigVNQB00000000SAMN12212187
403646-16
GCA_020119595.1ContigVNQA00000000SAMN12212186
403575-12
GCA_020119485.1ContigVNQC00000000SAMN12212188
403669-15
GCA_020119415.1ContigVNQF00000000SAMN12212191
403850-15
GCA_020119385.1ScaffoldVNQH00000000SAMN12212193
404197-15
GCA_020119325.1ContigVNQG00000000SAMN12212192
403869-16
GCA_020119235.1ContigVNQI00000000SAMN12212194
404261-16
GCA_020120185.1ScaffoldVNOY00000000SAMN12212158
401269-14
GCA_020120155.1ContigVNOZ00000000SAMN12212159
401433-14
GCA_020120135.1ContigVNPA00000000SAMN12212160
401508-14
GCA_020120115.1ContigVNPB00000000SAMN12212161
401589-13
GCA_020120085.1ScaffoldVNPD00000000SAMN12212163
401629-14
GCA_020120075.1ContigVNPC00000000SAMN12212162
401608-14
GCA_020120035.1ContigVNPF00000000SAMN12212165
401649-3-14
GCA_020120055.1ContigVNPG00000000SAMN12212166
401677-14
GCA_020119985.1ContigVNPH00000000SAMN12212167
401717-13
GCA_020120015.1ContigVNPE00000000SAMN12212164
401649-2-14
GCA_020119975.1ContigVNPL00000000SAMN12212171
402152-13
GCA_020119925.1ScaffoldVNPI00000000SAMN12212168
401801-14
GCA_020119945.1ContigVNPJ00000000SAMN12212169
401811-12
GCA_020119915.1ContigVNPK00000000SAMN12212170
402006-2-12
GCA_020119855.1ScaffoldVNPN00000000SAMN12212173
402592-13
GCA_020119835.1ContigVNPQ00000000SAMN12212176
402840-10
GCA_020119815.1ContigVNPR00000000SAMN12212177
402854-12
GCA_020119795.1ContigVNPP00000000SAMN12212175
402738-10
GCA_020119775.1ContigVNPS00000000SAMN12212178
402859-10
GCA_020119695.1ScaffoldVNPW00000000SAMN12212182
403091-13
GCA_020119755.1ScaffoldVNPT00000000SAMN12212179
402894-13
GCA_020119735.1ScaffoldVNPU00000000SAMN12212180
402949-11
GCA_020119715.1ContigVNPV00000000SAMN12212181
402962-16
GCA_020120475.1ContigVNOK00000000SAMN12212144
400455-13
GCA_020120465.1ScaffoldVNOI00000000SAMN12212142
400266-13
GCA_020120445.1ContigVNOH00000000SAMN12212141
400231-13
GCA_020120435.1ScaffoldVNOJ00000000SAMN12212143
400354-14
GCA_020120415.1ContigVNOL00000000SAMN12212145
400696-12
GCA_020120385.1ContigVNOP00000000SAMN12212149
400854-13
GCA_020120375.1ScaffoldVNOO00000000SAMN12212148
400840-14
GCA_020120355.1ContigVNOM00000000SAMN12212146
400751-14
GCA_020120335.1ContigVNON00000000SAMN12212147
400793-11
GCA_020120315.1ContigVNOQ00000000SAMN12212150
400924-13
GCA_020120275.1ContigVNOS00000000SAMN12212152
400960-13
GCA_020120245.1ContigVNOU00000000SAMN12212154
401075-12
GCA_020120255.1ContigVNOR00000000SAMN12212151
400925-13
GCA_020120235.1ContigVNOV00000000SAMN12212155
401084-17
GCA_020120215.1ContigVNOW00000000SAMN12212156
401125-16
GCA_020120575.1ContigVNOF00000000SAMN12212139
400161-1-16
GCA_020120555.1ContigVNOG00000000SAMN12212140
400161-2-16
GCA_020120675.1ContigVNOA00000000SAMN12212134
357664-14
GCA_020120645.1ContigVNNX00000000SAMN12212131
304450-1-16
GCA_020120635.1ContigVNNY00000000SAMN12212132
304450-3-16
GCA_020121075.1ScaffoldVNNA00000000SAMN12212108
128879-17
GCA_020121045.1ContigVNNB00000000SAMN12212109
128918-17
GCA_020121035.1ContigVNND00000000SAMN12212111
129282-17
GCA_020121015.1ContigVNNC00000000SAMN12212110
129238-17
GCA_020120995.1ContigVNNE00000000SAMN12212112
129496-17
GCA_020121245.1ContigVNMT00000000SAMN12212101
118937-12
GCA_020121225.1ContigVNMP00000000SAMN12212097
110856-17
GCA_020121235.1ScaffoldVNMQ00000000SAMN12212098
111684-17
GCA_020121215.1ContigVNMS00000000SAMN12212100
118559-17
GCA_020121195.1ScaffoldVNMU00000000SAMN12212102
120669-12
GCA_020121155.1ContigVNMW00000000SAMN12212104
125929-17
GCA_020121165.1ContigVNMV00000000SAMN12212103
124203-17
GCA_020121125.1ContigVNMY00000000SAMN12212106
126458-17
GCA_020120775.1ContigVNNT00000000SAMN12212127
304170-1-16
GCA_020120765.1ContigVNNW00000000SAMN12212130
304312-16
GCA_020120755.1ContigVNNU00000000SAMN12212128
304170-2-16
GCA_020120735.1ContigVNNS00000000SAMN12212126
303987-16
GCA_020120715.1ContigVNNV00000000SAMN12212129
304256-16
GCA_020120955.1ContigVNNF00000000SAMN12212113
130064-17
GCA_020120925.1ContigVNNH00000000SAMN12212115
132027-17
GCA_020120915.1ContigVNNI00000000SAMN12212116
132036-17
GCA_020121405.1ContigVNMO00000000SAMN12212096
110686-17
GCA_020117315.1ContigVNTP00000000SAMN12212255
700678-17
GCA_020117295.1ContigVNTO00000000SAMN12212254
700607-17
GCA_020117155.1ContigVNTV00000000SAMN12212261
704984-11
GCA_020117135.1ContigVNTX00000000SAMN12212263
705023-2-17
GCA_020117415.1ContigVNTK00000000SAMN12212250
700521-17
GCA_020117395.1ScaffoldVNWJ00000000SAMN12212249
700505-17
GCA_020118115.1ContigVNSE00000000SAMN12212242
612634-16
GCA_020118145.1ContigVNRY00000000SAMN12212236
608740-17
GCA_020118075.1ContigVNSB00000000SAMN12212239
608935-17
GCA_020118285.1ContigVNRS00000000SAMN12212230
608276-17
GCA_020118255.1ContigVNRU00000000SAMN12212232
608420-17
GCA_020118335.1ScaffoldVNRQ00000000SAMN12212228
608017-17
GCA_020118575.1ContigVNRF00000000SAMN12212217
503397-12
GCA_020116535.1ContigVNUY00000000SAMN12212290
713220-4-17
GCA_020116295.1ContigVNVH00000000SAMN12212297
800121-13
GCA_020115695.1ScaffoldVNVY00000000SAMN12212066
805689
GCA_020115655.1ContigVNVZ00000000SAMN12212312
806823-15
GCA_020115615.1ContigVNWC00000000SAMN12212315
808927-4-16
GCA_020115595.1ContigVNWD00000000SAMN12212316
808934-11-16
GCA_020116195.1ContigVNVK00000000SAMN12212300
801079-17
GCA_020116155.1ContigVNVL00000000SAMN12212301
801080-17
GCA_020116135.1ContigVNVM00000000SAMN12212302
801403-17
GCA_020116065.1ContigVNVO00000000SAMN12212304
801752-1-17
GCA_020116055.1ContigVNVN00000000SAMN12212303
801722-1-17
GCA_020115995.1ContigVNVP00000000SAMN12212305
801869-6-17
GCA_020115935.1ContigVNVS00000000SAMN12212308
804135-14
GCA_020115955.1ContigVNVQ00000000SAMN12212306
803653-17
GCA_020115915.1ContigVNVR00000000SAMN12212307
803710-16
GCA_020115895.1ContigVNVT00000000SAMN12212065
804442-17
GCA_020115865.1ContigVNVU00000000SAMN12212309
804562-15
GCA_020115745.1ContigVNVW00000000SAMN12212311
805100-17
GCA_020115495.1ContigVNWG00000000SAMN12212319
DSM 30104
GCA_020115175.1ContigVNNM00000000SAMN12212120
134730-17
GCA_020115155.1ContigVNNL00000000SAMN12212119
134152-17
GCA_020115515.1ContigVNWF00000000SAMN12212318
DSM 28211
GCA_020117335.1ContigVNTN00000000SAMN12212253
700573-16
GCA_020120975.1ContigVNNG00000000SAMN12212114
131515-17
GCA_020119245.1ContigVNQL00000000SAMN12212197
404431-16
GCA_020119475.1ContigVNQE00000000SAMN12212190
403774-16
GCA_020119435.1ContigVNQD00000000SAMN12212189
403773-16
GCA_020119075.1ContigVNQP00000000SAMN12212201
404813-6-17
GCA_020120685.1ContigVNNZ00000000SAMN12212133
304471-16
GCA_020120835.1ContigVNNK00000000SAMN12212118
133832-17
GCA_020121395.1ContigVNMK00000000SAMN12212092
101332-17
GCA_020121365.1ContigVNML00000000SAMN12212093
105668-17
GCA_020121355.1ContigVNMM00000000SAMN12212094
105710-17
GCA_020117375.1ContigVNTL00000000SAMN12212251
700538-17
GCA_020117255.1ContigVNTR00000000SAMN12212257
701411-17
GCA_020117215.1ContigVNTT00000000SAMN12212259
704117-17
GCA_020117185.1ContigVNTW00000000SAMN12212262
705021-17
GCA_020117175.1ContigVNTU00000000SAMN12212260
704195-17
GCA_020118735.1ContigVNRA00000000SAMN12212212
502642-17
GCA_020118475.1ContigVNRL00000000SAMN12212223
605161-17
GCA_020118515.1ScaffoldVNRH00000000SAMN12212219
600085-17
GCA_020118155.1ContigVNSA00000000SAMN12212238
608870-17
GCA_020118095.1ContigVNSD00000000SAMN12212241
612524-16
GCA_020116235.1ContigVNVJ00000000SAMN12212299
800274-17
GCA_020116335.1ContigVNVE00000000SAMN12212294
718755-16
GCA_020115545.1ContigVNWE00000000SAMN12212317
DSM 15968
GCA_020115635.1ContigVNWA00000000SAMN12212313
806877-17
GCA_020115675.1ContigVNWB00000000SAMN12212314
807594-16
GCA_015679375.1ContigVNVD00000000SAMN12212293
717892-17
GCA_020116345.1ContigVNVC00000000SAMN12212323
717709-17
GCA_020115725.1ContigVNVX00000000SAMN12212324
805497-17
SRA Data Details
ParameterValue
Data volume, Gbases127
Data volume, Mbytes71424

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