ID 541977 - BioProject

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Accession: PRJNA541977 ID: 541977

GenomeTrakr Project: U.S. Food and Drug Administration - CFSAN

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This project is a component of the Food and Drug Administration, Center for Food Safety and Applied Nutrition: FoodBorne Pathogen Research

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525 additional projects are components of the Food and Drug Administration, Center for Food Safety and Applied Nutrition: FoodBorne Pathogen Research.

Whole genome sequencing using long-read nanopore technology of cultured pathogens collected for research purposes as part of the U. More...

Accession	PRJNA541977
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 8-May-2019 FDA Center for Food Safety and Applied Nutrition
Related Resources	U.S. Food and Drug Administration - CFSAN - Whole Genome Sequencing (WGS) Program
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	23
WGS master	1
Genomic DNA	22
SRA Experiments	11
Protein Sequences	44033
Other datasets
BioSample	11
Assembly	10

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

9
1
10

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_009648955.1		6	SAMN10574728	CFSAN068816	Bacillus paranthracis
GCA_009648935.1		1	SAMN10574724	MiY-A	Citrobacter braakii
GCA_016087235.1	AAXWEY000000000		SAMN03861758	CFSAN035868	Citrobacter braakii
GCA_009648895.1		4	SAMN10574727	CFSAN068773	Cronobacter sakazakii
GCA_009648915.1		2	SAMN10574725	MiY-F	Enterobacter cancerogenus
GCA_009648995.1		1	SAMN10574726	LEMB18	Klebsiella pneumoniae
GCA_009648975.1		1	SAMN10574723	LEMB11	Klebsiella variicola
GCA_009648875.1		1	SAMN10574818	CFSAN084950	Pseudomonas aeruginosa
GCA_009648855.1		1	SAMN10574817	CFSAN084952	Pseudomonas sp. CFSAN084952
GCA_009662135.1		5	SAMN04323531	CFSAN029786	Shigella dysenteriae

SRA Data Details

Parameter	Value
Data volume, Gbases	7
Data volume, Mbytes	5614

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