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Accession: PRJEB31846 ID: 530950

Salmonella enterica isolates from animal production, food and the environment in Germany

Whole-genome sequence data for Salmonella enterica isolated from animal production, food and the environment and derived from routine diagnostics, monitoring and control programs at the German National Reference Laboratory for Salmonella (German Federal Institute for Risk Assessment (BfR)).

The National Reference Laboratory for Salmonella located at the German Federal Institute for Risk Assessment (BfR) is using WGS methods for characterization of Salmonella isolates from animal production, food and the environment. More...
AccessionPRJEB31846
Data TypeGenome sequencing and assembly
ScopeMonoisolate
SubmissionRegistration date: 4-Apr-2019
FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)89
SRA Experiments1300
Other datasets
BioSample1389
Assembly89
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
89
89
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_031001635.1ContigJAVGCN000000000SAMN37123617
15-SA00392-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001615.1ContigJAVGCO000000000SAMN37123616
15-SA00128-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001595.1ContigJAVGCP000000000SAMN37123615
13-SA00497-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001575.1ContigJAVGCM000000000SAMN37123618
15-SA00460-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001555.1ContigJAVGCJ000000000SAMN37123621
15-SA00761-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001535.1ContigJAVGCG000000000SAMN37123624
16-SA00062-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001515.1ContigJAVGCL000000000SAMN37123619
15-SA00567-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001475.1ContigJAVGCF000000000SAMN37123625
16-SA00532-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001495.1ContigJAVGCH000000000SAMN37123623
15-SA02795-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001455.1ContigJAVGCE000000000SAMN37123626
16-SA00808-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001375.1ContigJAVGCA000000000SAMN37123630
17-SA00461-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001435.1ContigJAVGCD000000000SAMN37123627
16-SA00901-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001395.1ContigJAVGCC000000000SAMN37123628
16-SA01146-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001385.1ContigJAVGBZ000000000SAMN37123631
17-SA00990-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001355.1ContigJAVGCK000000000SAMN37123620
15-SA00598-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001335.1ContigJAVGCI000000000SAMN37123622
15-SA01441-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001305.1ContigJAVGBY000000000SAMN37123632
17-SA01094-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001295.1ContigJAVGBX000000000SAMN37123633
17-SA01499-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001275.1ContigJAVGBW000000000SAMN37123634
17-SA01716-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001255.1ContigJAVGCB000000000SAMN37123629
16-SA02666-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001235.1ContigJAVGBS000000000SAMN37123638
17-SA03242-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001205.1ContigJAVGBR000000000SAMN37123639
18-SA00377-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001195.1ContigJAVGBP000000000SAMN37123641
18-SA00666-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001055.1ContigJAVGBM000000000SAMN37123644
18-SA00692-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001065.1ContigJAVGBT000000000SAMN37123637
17-SA02428-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001075.1ContigJAVGBQ000000000SAMN37123640
18-SA00665-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001035.1ContigJAVGBL000000000SAMN37123645
18-SA00697-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031001015.1ContigJAVGCQ000000000SAMN37123614
13-SA00124-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000985.1ContigJAVGBU000000000SAMN37123636
17-SA02140-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000975.1ContigJAVGBK000000000SAMN37123646
18-SA01990-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000955.1ContigJAVGBJ000000000SAMN37123647
18-SA02060-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000935.1ContigJAVGBO000000000SAMN37123642
18-SA00673-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000905.1ContigJAVGBN000000000SAMN37123643
18-SA00690-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000895.1ContigJAVGBI000000000SAMN37123648
18-SA02321-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000875.1ContigJAVGBD000000000SAMN37123653
19-SA00033-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000855.1ContigJAVGBC000000000SAMN37123654
19-SA00081-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000835.1ContigJAVGBE000000000SAMN37123652
18-SA04341-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000815.1ContigJAVGBB000000000SAMN37123655
19-SA00081-5
Salmonella enterica subsp. enterica serovar Agona
GCA_031000795.1ContigJAVGBF000000000SAMN37123651
18-SA03292-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000775.1ContigJAVGBG000000000SAMN37123650
18-SA03214-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000755.1ContigJAVGBH000000000SAMN37123649
18-SA03146-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000735.1ContigJAVFZM000000000SAMN37123696
22-SA01734-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000715.1ContigJAVGBA000000000SAMN37123656
19-SA00150-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000695.1ContigJAVGAZ000000000SAMN37123657
19-SA01353-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000675.1ContigJAVFZJ000000000SAMN37123699
22-SA02220-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000655.1ContigJAVFZI000000000SAMN37123700
22-SA02512-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000635.1ContigJAVFZW000000000SAMN37123686
20-SA02118-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000615.1ContigJAVFZH000000000SAMN37123701
22-SA02583-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000585.1ContigJAVFZQ000000000SAMN37123692
21-SA02875-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000565.1ContigJAVFZU000000000SAMN37123688
20-SA02861-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000535.1ContigJAVFZV000000000SAMN37123687
20-SA02469-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000525.1ContigJAVFZR000000000SAMN37123691
21-SA02098-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000515.1ContigJAVGAC000000000SAMN37123680
20-SA01798-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000495.1ContigJAVFZP000000000SAMN37123693
21-SA02919-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000455.1ContigJAVGAB000000000SAMN37123681
20-SA01827-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000465.1ContigJAVFZS000000000SAMN37123690
21-SA01883-1
Salmonella enterica subsp. enterica serovar Agona
GCA_031000395.1ContigJAVFZN000000000SAMN37123695
22-SA01561-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000375.1ContigJAVGAS000000000SAMN37123664
19-SA02896-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000235.1ContigJAVGAU000000000SAMN37123662
19-SA02357-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000225.1ContigJAVGAV000000000SAMN37123661
19-SA02176-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000215.1ContigJAVGAT000000000SAMN37123663
19-SA02365-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000195.1ContigJAVGAY000000000SAMN37123658
19-SA01844-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000065.1ContigJAVGAR000000000SAMN37123665
19-SA02923-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000055.1ContigJAVGAO000000000SAMN37123668
19-SA03254-0
Salmonella enterica subsp. enterica serovar Agona
GCA_031000035.1ContigJAVGAX000000000SAMN37123659
19-SA01852-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999935.1ContigJAVGAN000000000SAMN37123669
19-SA03321-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999885.1ContigJAVGAM000000000SAMN37123670
19-SA03600-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999875.1ContigJAVGAQ000000000SAMN37123666
19-SA02961-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999835.1ContigJAVGBV000000000SAMN37123635
17-SA01790-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999845.1ContigJAVGAL000000000SAMN37123671
20-SA00247-3
Salmonella enterica subsp. enterica serovar Agona
GCA_030999755.1ContigJAVGAW000000000SAMN37123660
19-SA02109-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999675.1ContigJAVGAH000000000SAMN37123675
20-SA00801-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999685.1ContigJAVGAK000000000SAMN37123672
20-SA00325-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999625.1ContigJAVGAJ000000000SAMN37123673
20-SA00333-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999615.1ContigJAVGAF000000000SAMN37123677
20-SA01487-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999555.1ContigJAVGAG000000000SAMN37123676
20-SA00938-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999485.1ContigJAVGAA000000000SAMN37123682
20-SA01896-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999415.1ContigJAVGAE000000000SAMN37123678
20-SA01615-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999425.1ContigJAVGAD000000000SAMN37123679
20-SA01797-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999375.1ContigJAVFZZ000000000SAMN37123683
20-SA01905-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999385.1ContigJAVGAI000000000SAMN37123674
20-SA00466-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999255.1ContigJAVFZY000000000SAMN37123684
20-SA01964-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999225.1ContigJAVFZT000000000SAMN37123689
21-SA00209-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999195.1ContigJAVGAP000000000SAMN37123667
19-SA03088-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999205.1ContigJAVFZG000000000SAMN37123702
22-SA02615-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030999175.1ContigJAVFZX000000000SAMN37123685
20-SA02048-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030997865.1ContigJAVFZK000000000SAMN37123698
22-SA01834-0
Salmonella enterica subsp. enterica serovar Agona
GCA_030997875.1ContigJAVFZL000000000SAMN37123697
22-SA01750-1
Salmonella enterica subsp. enterica serovar Agona
GCA_030997885.1ContigJAVFZO000000000SAMN37123694
22-SA01512-0
Salmonella enterica subsp. enterica serovar Agona
SRA Data Details
ParameterValue
Data volume, Gbases640
Data volume, Tbytes0.31

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    Salmonella enterica isolates from animal production, food and the environment in Germany
    Whole-genome sequence data for Salmonella enterica isolated from animal production, food and the environment and derived from routine diagnostics, monitoring and control programs at the German National Reference Laboratory for Salmonella (German Federal Institute for Risk Assessment (BfR)).
    BioProject

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