Dickeya dianthicola and Pectobacterium spp. (ID 453473) - BioProject

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Accession: PRJNA453473 ID: 453473

Dickeya dianthicola and Pectobacterium spp.

Genomic diversity of Blackleg pathogens in Pakistan

Genomic analyses of the pathogen causing Blackleg of Potato in Pakistan was done to find out the diversity among the pathogens for developing better management strategies like bio-control and precautionary measures as Quarantine rules

Accession	PRJNA453473
Data Type	Genome sequencing and assembly
Scope	Multispecies
Grants	""Rhizosphere engineering through biostimulation of quorum quenching bacteria for controlling bacterial diseases in vegetables"" (Grant ID S7 0664-01-10, Grand Challenges Canada)
Submission	Registration date: 25-Apr-2018 - University of Agriculture Faisalabad - Sohaib Sarfraz
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	328
WGS master	5
Protein Sequences	21407
Other datasets
BioSample	5
Assembly	5

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

5
5

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_003121805.1	QESZ00000000	SAMN08979054	SS70	Dickeya dianthicola
GCA_003121725.1	QESY00000000	SAMN08979055	SS26	Pectobacterium atrosepticum
GCA_003121785.1	QESW00000000	SAMN08979057	SS90	Pectobacterium parmentieri
GCA_003121735.1	QESX00000000	SAMN08979056	SS28	Pectobacterium polaris
GCA_003121765.1	QESV00000000	SAMN08979058	SS96	Pectobacterium versatile

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Genome
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Nucleotide
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Protein
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Related Genes
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WGS master
Link to WGS master record(s)

LinkOut to external resources

2858466076: Pectobacterium polaris SS28 [Integrated Microbial Genomes]
2858466076: Pectobacterium polaris SS28
Integrated Microbial Genomes
2855195626: Pectobacterium atrosepticum SS26 [Integrated Microbial Genomes]
2855195626: Pectobacterium atrosepticum SS26
Integrated Microbial Genomes
2871272651: Pectobacterium carotovorum SS96 [Integrated Microbial Genomes]
2871272651: Pectobacterium carotovorum SS96
Integrated Microbial Genomes
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

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Dickeya dianthicola and Pectobacterium spp.
Dickeya dianthicola and Pectobacterium spp.
Genomic diversity of Blackleg pathogens in Pakistan

BioProject
Homologene neighbors for GEO Profiles (Select 97714133) (0)
GEO Profiles
CHM CHM Rab escort protein [Homo sapiens]
CHM CHM Rab escort protein [Homo sapiens]
Gene ID:1121

Gene
Gene Links for GEO Profiles (Select 111468832) (1)
Gene
Gene Links for GEO Profiles (Select 111451533) (2)
Gene

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