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Accession: PRJNA449634 ID: 449634

O80 EHEC and related strains of clonal complex 165 sequencing

Enterohemorrhagic Escherichia coli (EHEC) represent a major world public health problem, as these intestinal pathogens are the first cause of acute renal failure in children. More...
AccessionPRJNA449634
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 11-Apr-2018
APHP, Hopital Robert Debre, IAME, UMR1137
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)8185
WGS master36
Other datasets
BioSample36
Assembly36
Assembly details:
Assembly levelNumber of Assemblies
27
9
36
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_003123425.1ScaffoldQBDH00000000SAMN08915513
32030
GCA_003123395.1ContigQBDC00000000SAMN08915518
H39-78
GCA_003123345.1ScaffoldQBCZ00000000SAMN08915521
36991
GCA_003123315.1ScaffoldQBCX00000000SAMN08915523
IH33264-07a
GCA_003123295.1ContigQBCW00000000SAMN08915524
37619
GCA_003123255.1ContigQBCS00000000SAMN08915528
40963
GCA_003123265.1ScaffoldQBCV00000000SAMN08915525
30347
GCA_003123525.1ScaffoldQBDN00000000SAMN08915507
34523
GCA_003123505.1ContigQBDM00000000SAMN08915508
RDEx444
GCA_003123465.1ScaffoldQBDJ00000000SAMN08915511
35431
GCA_003123455.1ScaffoldQBDI00000000SAMN08915512
33004
GCA_003123415.1ScaffoldQBDF00000000SAMN08915515
34824
GCA_003123215.1ScaffoldQBCP00000000SAMN08915531
VTB-262
GCA_003123175.1ScaffoldQBCO00000000SAMN08915532
CB12669
GCA_003123135.1ScaffoldQBCL00000000SAMN08915535
36047
GCA_003123075.1ScaffoldQBCH00000000SAMN08915539
CB13938
GCA_003123115.1ScaffoldQBCJ00000000SAMN08915537
EC-POI
GCA_003123085.1ScaffoldQBCI00000000SAMN08915538
CB15046
GCA_003123055.1ScaffoldQBCG00000000SAMN08915540
CB15387
GCA_003122935.1ContigQBDB00000000SAMN08915519
CB13483
GCA_003122885.1ScaffoldQBCU00000000SAMN08915526
33115
GCA_003122805.1ScaffoldQBCK00000000SAMN08915536
H-511-4
GCA_003123565.2ScaffoldQBDP00000000SAMN08915505
38009
GCA_003123015.2ScaffoldQBDK00000000SAMN08915510
35344
GCA_003122965.2ContigQBDE00000000SAMN08915516
31707
GCA_003122915.2ScaffoldQBCQ00000000SAMN08915530
FV-4476
GCA_003123155.2ScaffoldQBCM00000000SAMN08915534
39307
GCA_003122955.2ScaffoldQBDD00000000SAMN08915517
H15-66.3
GCA_003123335.2ScaffoldQBCY00000000SAMN08915522
IH102878-12a
GCA_003123355.2ScaffoldQBDA00000000SAMN08915520
34839
GCA_003123235.2ContigQBCR00000000SAMN08915529
IH43632-03a
GCA_003123555.2ScaffoldQBDO00000000SAMN08915506
41207
GCA_003123495.2ScaffoldQBDL00000000SAMN08915509
39571
GCA_003122995.2ScaffoldQBDG00000000SAMN08915514
31509
GCA_003122855.2ContigQBCT00000000SAMN08915527
36549
GCA_003123165.2ContigQBCN00000000SAMN08915533
CB12623

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