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Accession: PRJNA383583 ID: 383583

Homo sapiens (human)

5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation (ATAC-Seq)

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This project is a component of the 5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation
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3 additional projects are components of the 5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation.
94592 additional projects are related by organism.
We generated 5hmC, WGBS and RNAseq of the cells in 5 stages during hES-to-pancreatic endoderm cell differantiation, and investigated the 5hmC correlation with 4 histones (H3K4me1, H3K4me3, H3K27ac and H3K27me3) during this process. More...
AccessionPRJNA383583; GEO: GSE97989
Data TypeEpigenomics
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsLi J et al., "Decoding the dynamic DNA methylation and hydroxymethylation landscapes in endodermal lineage intermediates during pancreatic differentiation of hESC.", Nucleic Acids Res, 2018 Apr 6;46(6):2883-2900
SubmissionRegistration date: 19-Apr-2017
Deqiang Sun, CEDP, Texas A&M U Health Science Center
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments5
Publications
PubMed1
PMC1
Other datasets
BioSample5
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes8
SRA Data Details
ParameterValue
Data volume, Gbases69
Data volume, Mbytes29458

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  • Homo sapiens
    Homo sapiens
    5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation (ATAC-Seq)
    BioProject
  • RecName: Full=Voltage-gated potassium channel regulatory subunit KCNG4; AltName:...
    RecName: Full=Voltage-gated potassium channel regulatory subunit KCNG4; AltName: Full=Potassium voltage-gated channel subfamily G member 4; AltName: Full=Voltage-gated potassium channel subunit Kv6.3; AltName: Full=Voltage-gated potassium channel subunit Kv6.4
    gi|26006803|sp|Q8TDN1.1|KCNG4_HUMAN
    Protein

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