Oryzias latipes strain:Hd-rR (ID 325079) - BioProject

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Accession: PRJNA325079 ID: 325079

Oryzias latipes strain:Hd-rR (Japanese medaka)

See Genome Information for Oryzias latipes

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167 additional projects are related by organism.

SMRT Sequencing (by PacBioRS) of Oryzias latipes strain Hd-rR

Accession	PRJNA325079
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Oryzias latipes[Taxonomy ID: 8090] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias; Oryzias latipes
Publications	Ichikawa K et al., "Centromere evolution and CpG methylation during vertebrate speciation.", Nat Commun, 2017 Nov 28;8(1):1833 Miya M et al., "Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences.", Mol Phylogenet Evol, 2003 Jan;26(1):121-38
Submission	Registration date: 12-Feb-2019 The University of Tokyo
Relevance	Model Organism

Project Data:

Assembly level

Number of Assemblies

2
2

Assembly	Level	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_004347445.1		RXZX00000000	25	SAMN06689957	Hd-rR	Oryzias latipes
GCA_002234675.1			24	SAMN06689957	Hd-rR	Oryzias latipes

Parameter	Value
Data volume, Gbases	167
Data volume, Tbytes	0.62

Supplemental Content

GOLD: Gp0235501 [Genomes On Line Database]
GOLD: Gp0235501
Genomes On Line Database
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

Oryzias latipes strain:Hd-rR
Oryzias latipes strain:Hd-rR
Oryzias latipes strain:Hd-rR

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