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Accession: PRJNA321556 ID: 321556

groundwater metagenome

groundwater metagenome Genome sequencing and assembly

Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments
AccessionPRJNA321556
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismgroundwater metagenome[Taxonomy ID: 717931]
unclassified sequences; metagenomes; ecological metagenomes; groundwater metagenome
PublicationsHernsdorf AW et al., "Potential for microbial H(2) and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments.", ISME J, 2017 Aug;11(8):1915-1929
SubmissionRegistration date: 13-Dec-2017
UC Berkeley
Related Resources
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)55184
WGS master209
SRA Experiments9
Protein Sequences557865
Publications
PubMed1
PMC1
Other datasets
BioSample218
Assembly209
Assembly details:
Assembly levelNumber of Assemblies
175
34
209
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_002841355.1ScaffoldPHFB00000000SAMN06767545
HGW-Actinobacteria-1
GCA_002843065.1ScaffoldPHFA00000000SAMN06767546
HGW-Actinobacteria-10
GCA_002843055.1ContigPHEZ00000000SAMN06767547
HGW-Actinobacteria-11
GCA_002841335.1ScaffoldPHEY00000000SAMN06767548
HGW-Actinobacteria-2
GCA_002841315.1ContigPHEW00000000SAMN06767550
HGW-Actinobacteria-4
GCA_002843035.1ScaffoldPHEV00000000SAMN06767551
HGW-Actinobacteria-5
GCA_002841295.1ContigPHEU00000000SAMN06767552
HGW-Actinobacteria-6
GCA_002841275.1ScaffoldPHET00000000SAMN06767553
HGW-Actinobacteria-7
GCA_002841215.1ScaffoldPHES00000000SAMN06767554
HGW-Actinobacteria-8
GCA_002841235.1ContigPHER00000000SAMN06767555
HGW-Actinobacteria-9
GCA_002842985.1ScaffoldPHEQ00000000SAMN06767556
HGW-Alphaproteobacteria-1
GCA_002842975.1ScaffoldPHEP00000000SAMN06767557
HGW-Alphaproteobacteria-10
GCA_002841195.1ContigPHEO00000000SAMN06767558
HGW-Alphaproteobacteria-11
GCA_002842905.1ScaffoldPHEN00000000SAMN06767559
HGW-Alphaproteobacteria-12
GCA_002842935.1ScaffoldPHEM00000000SAMN06767560
HGW-Alphaproteobacteria-13
GCA_002842925.1ScaffoldPHEL00000000SAMN06767561
HGW-Alphaproteobacteria-14
GCA_002842895.1ContigPHEK00000000SAMN06767562
HGW-Alphaproteobacteria-15
GCA_002841225.1ScaffoldPHEJ00000000SAMN06767563
HGW-Alphaproteobacteria-16
GCA_002841175.1ContigPHEI00000000SAMN06767564
HGW-Alphaproteobacteria-17
GCA_002841155.1ScaffoldPHEH00000000SAMN06767565
HGW-Alphaproteobacteria-18
GCA_002842835.1ScaffoldPHEG00000000SAMN06767566
HGW-Alphaproteobacteria-2
GCA_002842875.1ScaffoldPHEF00000000SAMN06767567
HGW-Alphaproteobacteria-3
GCA_002842855.1ScaffoldPHEE00000000SAMN06767568
HGW-Alphaproteobacteria-4
GCA_002842815.1ScaffoldPHED00000000SAMN06767569
HGW-Alphaproteobacteria-5
GCA_002841115.1ScaffoldPHEC00000000SAMN06767570
HGW-Alphaproteobacteria-6
GCA_002842735.1ScaffoldPHEB00000000SAMN06767571
HGW-Alphaproteobacteria-7
GCA_002842795.1ScaffoldPHEA00000000SAMN06767572
HGW-Alphaproteobacteria-8
GCA_002842775.1ContigPHDZ00000000SAMN06767573
HGW-Alphaproteobacteria-9
GCA_002842755.1ScaffoldPHDU00000000SAMN06767578
HGW-Bacteroidetes-1
GCA_002842695.1ScaffoldPHDT00000000SAMN06767579
HGW-Bacteroidetes-10
GCA_002842665.1ScaffoldPHDS00000000SAMN06767580
HGW-Bacteroidetes-11
GCA_002841035.1ScaffoldPHDR00000000SAMN06767581
HGW-Bacteroidetes-12
GCA_002841025.1ContigPHDQ00000000SAMN06767582
HGW-Bacteroidetes-13
GCA_002842655.1ScaffoldPHDP00000000SAMN06767583
HGW-Bacteroidetes-14
GCA_002841015.1ScaffoldPHDO00000000SAMN06767584
HGW-Bacteroidetes-15
GCA_002840975.1ScaffoldPHDN00000000SAMN06767585
HGW-Bacteroidetes-16
GCA_002840985.1ScaffoldPHDM00000000SAMN06767586
HGW-Bacteroidetes-17
GCA_002842635.1ContigPHDL00000000SAMN06767587
HGW-Bacteroidetes-18
GCA_002842605.1ScaffoldPHDK00000000SAMN06767588
HGW-Bacteroidetes-19
GCA_002842575.1ScaffoldPHDJ00000000SAMN06767589
HGW-Bacteroidetes-2
GCA_002840945.1ScaffoldPHDI00000000SAMN06767590
HGW-Bacteroidetes-20
GCA_002840935.1ScaffoldPHDH00000000SAMN06767591
HGW-Bacteroidetes-21
GCA_002842565.1ScaffoldPHDG00000000SAMN06767592
HGW-Bacteroidetes-22
GCA_002842545.1ContigPHDF00000000SAMN06767593
HGW-Bacteroidetes-23
GCA_002842505.1ScaffoldPHDE00000000SAMN06767594
HGW-Bacteroidetes-3
GCA_002840905.1ScaffoldPHDD00000000SAMN06767595
HGW-Bacteroidetes-4
GCA_002842515.1ContigPHDC00000000SAMN06767596
HGW-Bacteroidetes-5
GCA_002842495.1ScaffoldPHDB00000000SAMN06767597
HGW-Bacteroidetes-6
GCA_002842465.1ScaffoldPHDA00000000SAMN06767598
HGW-Bacteroidetes-7
GCA_002840895.1ScaffoldPHCZ00000000SAMN06767599
HGW-Bacteroidetes-8
GCA_002842425.1ScaffoldPHCY00000000SAMN06767600
HGW-Bacteroidetes-9
GCA_002842435.1ContigPHCX00000000SAMN06767601
HGW-Betaproteobacteria-1
GCA_002842415.1ScaffoldPHCW00000000SAMN06767602
HGW-Betaproteobacteria-10
GCA_002842395.1ScaffoldPHCV00000000SAMN06767603
HGW-Betaproteobacteria-11
GCA_002842345.1ScaffoldPHCU00000000SAMN06767604
HGW-Betaproteobacteria-12
GCA_002842325.1ScaffoldPHCT00000000SAMN06767605
HGW-Betaproteobacteria-13
GCA_002840845.1ScaffoldPHCS00000000SAMN06767606
HGW-Betaproteobacteria-14
GCA_002842335.1ScaffoldPHCR00000000SAMN06767607
HGW-Betaproteobacteria-15
GCA_002840835.1ContigPHCQ00000000SAMN06767608
HGW-Betaproteobacteria-16
GCA_002842315.1ContigPHCP00000000SAMN06767609
HGW-Betaproteobacteria-17
GCA_002842265.1ScaffoldPHCO00000000SAMN06767610
HGW-Betaproteobacteria-18
GCA_002840825.1ContigPHCN00000000SAMN06767611
HGW-Betaproteobacteria-19
GCA_002842255.1ScaffoldPHCM00000000SAMN06767612
HGW-Betaproteobacteria-2
GCA_002842195.1ScaffoldPHCL00000000SAMN06767613
HGW-Betaproteobacteria-20
GCA_002840815.1ContigPHCK00000000SAMN06767614
HGW-Betaproteobacteria-21
GCA_002842285.1ScaffoldPHCJ00000000SAMN06767615
HGW-Betaproteobacteria-22
GCA_002842205.1ScaffoldPHCI00000000SAMN06767616
HGW-Betaproteobacteria-3
GCA_002840785.1ScaffoldPHCH00000000SAMN06767617
HGW-Betaproteobacteria-4
GCA_002842155.1ContigPHCG00000000SAMN06767618
HGW-Betaproteobacteria-5
GCA_002842145.1ScaffoldPHCF00000000SAMN06767619
HGW-Betaproteobacteria-6
GCA_002840765.1ScaffoldPHCE00000000SAMN06767620
HGW-Betaproteobacteria-7
GCA_002842135.1ScaffoldPHCD00000000SAMN06767621
HGW-Betaproteobacteria-8
GCA_002842215.1ScaffoldPHCC00000000SAMN06767622
HGW-Betaproteobacteria-9
GCA_002841105.1ScaffoldPHDY00000000SAMN06767574
HGW-Altiarchaeales-1
GCA_002841095.1ScaffoldPHDX00000000SAMN06767575
HGW-Altiarchaeales-2
GCA_002842715.1ScaffoldPHDW00000000SAMN06767576
HGW-Altiarchaeales-3
GCA_002843005.1ScaffoldPHEX00000000SAMN06767549
HGW-Actinobacteria-3
GCA_002841055.1ScaffoldPHDV00000000SAMN06767577
HGW-Atribacteria-1
GCA_002841975.1ScaffoldPHBQ00000000SAMN06767634
HGW-Cloacimonetes-1
GCA_002842035.1ScaffoldPHBP00000000SAMN06767635
HGW-Cloacimonetes-2
GCA_002840645.1ScaffoldPHBO00000000SAMN06767636
HGW-Cloacimonetes-3
GCA_002841735.1ScaffoldPHAP00000000SAMN06767661
HGW-Dependentiae-1
GCA_002840365.1ScaffoldPHAO00000000SAMN06767662
HGW-Dojkabacteria-1
GCA_002840305.1ContigPHAI00000000SAMN06767687
HGW-Falkowbacteria-1
GCA_002841655.1ContigPHAH00000000SAMN06767688
HGW-Falkowbacteria-2
GCA_002839855.1ScaffoldPGYV00000000SAMN06767726
HGW-Goldbacteria-1
GCA_002839745.1ScaffoldPGYQ00000000SAMN06767731
HGW-Kuenenbacteria-1
GCA_002839735.1ScaffoldPGYP00000000SAMN06767732
HGW-Melainabacteria-1
GCA_002839545.1ScaffoldPGYG00000000SAMN06767741
HGW-Methanoperedenaceae-1
GCA_002839505.1ContigPGYE00000000SAMN06767743
HGW-Peregrinibacteria-1
GCA_002839445.1ScaffoldPGYB00000000SAMN06767746
HGW-Riflebacteria-1
GCA_002839435.1ScaffoldPGYA00000000SAMN06767747
HGW-Riflebacteria-2
GCA_002839415.1ScaffoldPGXZ00000000SAMN06767748
HGW-Saccharibacteria-1
GCA_002838975.1ScaffoldPGXC00000000SAMN06767771
HGW-Wallbacteria-1
GCA_002842085.1ScaffoldPHCA00000000SAMN06767624
HGW-Chloroflexi-1
GCA_002840755.1ScaffoldPHBZ00000000SAMN06767625
HGW-Chloroflexi-10
GCA_002840735.1ScaffoldPHBY00000000SAMN06767626
HGW-Chloroflexi-2
GCA_002842045.1ScaffoldPHBX00000000SAMN06767627
HGW-Chloroflexi-3
GCA_002840715.1ScaffoldPHBW00000000SAMN06767628
HGW-Chloroflexi-4
GCA_002842015.1ScaffoldPHBV00000000SAMN06767629
HGW-Chloroflexi-5
GCA_002840685.1ContigPHBU00000000SAMN06767630
HGW-Chloroflexi-6
GCA_002842065.1ContigPHBT00000000SAMN06767631
HGW-Chloroflexi-7
GCA_002841995.1ScaffoldPHBS00000000SAMN06767632
HGW-Chloroflexi-8
GCA_002840675.1ScaffoldPHBR00000000SAMN06767633
HGW-Chloroflexi-9
GCA_002840635.1ScaffoldPHBN00000000SAMN06767637
HGW-Deltaproteobacteria-1
GCA_002840605.1ScaffoldPHBM00000000SAMN06767638
HGW-Deltaproteobacteria-10
GCA_002840595.1ScaffoldPHBL00000000SAMN06767639
HGW-Deltaproteobacteria-11
GCA_002840565.1ScaffoldPHBK00000000SAMN06767640
HGW-Deltaproteobacteria-12
GCA_002840555.1ScaffoldPHBJ00000000SAMN06767641
HGW-Deltaproteobacteria-13
GCA_002841945.1ScaffoldPHBI00000000SAMN06767642
HGW-Deltaproteobacteria-14
GCA_002840535.1ScaffoldPHBH00000000SAMN06767643
HGW-Deltaproteobacteria-15
GCA_002841915.1ContigPHBG00000000SAMN06767644
HGW-Deltaproteobacteria-16
GCA_002841905.1ScaffoldPHBF00000000SAMN06767645
HGW-Deltaproteobacteria-17
GCA_002841885.1ScaffoldPHBE00000000SAMN06767646
HGW-Deltaproteobacteria-18
GCA_002841865.1ScaffoldPHBD00000000SAMN06767647
HGW-Deltaproteobacteria-19
GCA_002840505.1ScaffoldPHBC00000000SAMN06767648
HGW-Deltaproteobacteria-2
GCA_002841845.1ScaffoldPHBB00000000SAMN06767649
HGW-Deltaproteobacteria-20
GCA_002840495.1ScaffoldPHBA00000000SAMN06767650
HGW-Deltaproteobacteria-21
GCA_002841825.1ScaffoldPHAZ00000000SAMN06767651
HGW-Deltaproteobacteria-22
GCA_002840465.1ScaffoldPHAY00000000SAMN06767652
HGW-Deltaproteobacteria-23
GCA_002841805.1ScaffoldPHAX00000000SAMN06767653
HGW-Deltaproteobacteria-24
GCA_002841785.1ScaffoldPHAW00000000SAMN06767654
HGW-Deltaproteobacteria-3
GCA_002841765.1ScaffoldPHAV00000000SAMN06767655
HGW-Deltaproteobacteria-4
GCA_002841755.1ScaffoldPHAU00000000SAMN06767656
HGW-Deltaproteobacteria-5
GCA_002840435.1ScaffoldPHAT00000000SAMN06767657
HGW-Deltaproteobacteria-6
GCA_002840445.1ScaffoldPHAS00000000SAMN06767658
HGW-Deltaproteobacteria-7
GCA_002840405.1ScaffoldPHAR00000000SAMN06767659
HGW-Deltaproteobacteria-8
GCA_002840385.1ScaffoldPHAQ00000000SAMN06767660
HGW-Deltaproteobacteria-9
GCA_002841695.1ScaffoldPHAN00000000SAMN06767663
HGW-Elusimicrobia-1
GCA_002841685.1ScaffoldPHAM00000000SAMN06767664
HGW-Elusimicrobia-2
GCA_002840355.1ScaffoldPHAL00000000SAMN06767665
HGW-Elusimicrobia-3
GCA_002840325.1ContigPHAK00000000SAMN06767666
HGW-Elusimicrobia-4
GCA_002841675.1ScaffoldPHAJ00000000SAMN06767667
HGW-Euryarchaeota-1
GCA_002841625.1ScaffoldPHAG00000000SAMN06767689
HGW-Firmicutes-1
GCA_002841605.1ScaffoldPHAF00000000SAMN06767690
HGW-Firmicutes-10
GCA_002840285.1ScaffoldPHAE00000000SAMN06767691
HGW-Firmicutes-11
GCA_002841595.1ScaffoldPHAD00000000SAMN06767692
HGW-Firmicutes-12
GCA_002841575.1ScaffoldPHAC00000000SAMN06767693
HGW-Firmicutes-13
GCA_002840275.1ContigPHAB00000000SAMN06767694
HGW-Firmicutes-14
GCA_002840245.1ScaffoldPHAA00000000SAMN06767695
HGW-Firmicutes-15
GCA_002841545.1ScaffoldPGZZ00000000SAMN06767696
HGW-Firmicutes-16
GCA_002841525.1ScaffoldPGZY00000000SAMN06767697
HGW-Firmicutes-17
GCA_002840225.1ContigPGZX00000000SAMN06767698
HGW-Firmicutes-18
GCA_002841515.1ScaffoldPGZW00000000SAMN06767699
HGW-Firmicutes-19
GCA_002841495.1ScaffoldPGZV00000000SAMN06767700
HGW-Firmicutes-2
GCA_002840205.1ScaffoldPGZU00000000SAMN06767701
HGW-Firmicutes-20
GCA_002841455.1ScaffoldPGZT00000000SAMN06767702
HGW-Firmicutes-21
GCA_002841435.1ScaffoldPGZS00000000SAMN06767703
HGW-Firmicutes-3
GCA_002841405.1ScaffoldPGZR00000000SAMN06767704
HGW-Firmicutes-4
GCA_002840195.1ScaffoldPGZQ00000000SAMN06767705
HGW-Firmicutes-5
GCA_002841445.1ScaffoldPGZP00000000SAMN06767706
HGW-Firmicutes-6
GCA_002841375.1ScaffoldPGZO00000000SAMN06767707
HGW-Firmicutes-7
GCA_002840165.1ScaffoldPGZN00000000SAMN06767708
HGW-Firmicutes-8
GCA_002841395.1ScaffoldPGZM00000000SAMN06767709
HGW-Firmicutes-9
GCA_002840095.1ScaffoldPGZL00000000SAMN06767710
HGW-Gammaproteobacteria-1
GCA_002840075.1ContigPGZK00000000SAMN06767711
HGW-Gammaproteobacteria-10
GCA_002840055.1ScaffoldPGZJ00000000SAMN06767712
HGW-Gammaproteobacteria-11
GCA_002840035.1ScaffoldPGZI00000000SAMN06767713
HGW-Gammaproteobacteria-12
GCA_002840155.1ScaffoldPGZH00000000SAMN06767714
HGW-Gammaproteobacteria-13
GCA_002840115.1ContigPGZG00000000SAMN06767715
HGW-Gammaproteobacteria-14
GCA_002840125.1ScaffoldPGZF00000000SAMN06767716
HGW-Gammaproteobacteria-15
GCA_002840015.1ScaffoldPGZE00000000SAMN06767717
HGW-Gammaproteobacteria-2
GCA_002843155.1ScaffoldPGZD00000000SAMN06767718
HGW-Gammaproteobacteria-3
GCA_002839995.1ScaffoldPGZC00000000SAMN06767719
HGW-Gammaproteobacteria-4
GCA_002839955.1ScaffoldPGZB00000000SAMN06767720
HGW-Gammaproteobacteria-5
GCA_002839965.1ScaffoldPGZA00000000SAMN06767721
HGW-Gammaproteobacteria-6
GCA_002839905.1ScaffoldPGYZ00000000SAMN06767722
HGW-Gammaproteobacteria-7
GCA_002839895.1ContigPGYY00000000SAMN06767723
HGW-Gammaproteobacteria-8
GCA_002839885.1ScaffoldPGYX00000000SAMN06767724
HGW-Gammaproteobacteria-9
GCA_002839875.1ScaffoldPGYW00000000SAMN06767725
HGW-Gemmatimonadetes-1
GCA_002839825.1ScaffoldPGYU00000000SAMN06767727
HGW-Ignavibacteriae-1
GCA_002839805.1ScaffoldPGYT00000000SAMN06767728
HGW-Ignavibacteriae-2
GCA_002839795.1ScaffoldPGYS00000000SAMN06767729
HGW-Ignavibacteriae-3
GCA_002839765.1ScaffoldPGYR00000000SAMN06767730
HGW-Ignavibacteriae-4
GCA_002839705.1ScaffoldPGYO00000000SAMN06767733
HGW-Methanobacteriales-1
GCA_002839685.1ScaffoldPGYN00000000SAMN06767734
HGW-Methanobacteriales-2
GCA_002839675.1ScaffoldPGYM00000000SAMN06767735
HGW-Methanomicrobiales-1
GCA_002839645.1ScaffoldPGYL00000000SAMN06767736
HGW-Methanomicrobiales-2
GCA_002839605.1ScaffoldPGYK00000000SAMN06767737
HGW-Methanomicrobiales-3
GCA_002839625.1ScaffoldPGYJ00000000SAMN06767738
HGW-Methanomicrobiales-4
GCA_002839585.1ScaffoldPGYI00000000SAMN06767739
HGW-Methanomicrobiales-5
GCA_002839575.1ScaffoldPGYH00000000SAMN06767740
HGW-Methanomicrobiales-6
GCA_002839535.1ScaffoldPGYF00000000SAMN06767742
HGW-Nitrospira-1
GCA_002839495.1ContigPGYD00000000SAMN06767744
HGW-Planctomycetes-1
GCA_002839475.1ContigPGYC00000000SAMN06767745
HGW-Planctomycetes-2
GCA_002839375.1ScaffoldPGXY00000000SAMN06767749
HGW-Spirochaetae-1
GCA_002839365.1ScaffoldPGXX00000000SAMN06767750
HGW-Spirochaetae-10
GCA_002839355.1ScaffoldPGXW00000000SAMN06767751
HGW-Spirochaetae-2
GCA_002839315.1ScaffoldPGXV00000000SAMN06767752
HGW-Spirochaetae-3
GCA_002839335.1ScaffoldPGXU00000000SAMN06767753
HGW-Spirochaetae-4
GCA_002839285.1ScaffoldPGXT00000000SAMN06767754
HGW-Spirochaetae-5
GCA_002839265.1ScaffoldPGXS00000000SAMN06767755
HGW-Spirochaetae-6
GCA_002839245.1ScaffoldPGXR00000000SAMN06767756
HGW-Spirochaetae-7
GCA_002839235.1ScaffoldPGXQ00000000SAMN06767757
HGW-Spirochaetae-8
GCA_002839205.1ScaffoldPGXP00000000SAMN06767758
HGW-Spirochaetae-9
GCA_002839185.1ScaffoldPGXO00000000SAMN06767759
HGW-Synergistetes-1
GCA_002839175.1ScaffoldPGXN00000000SAMN06767760
HGW-Synergistetes-2
GCA_002839155.1ScaffoldPGXM00000000SAMN06767761
HGW-Tenericutes-1
GCA_002839095.1ScaffoldPGXL00000000SAMN06767762
HGW-Tenericutes-2
GCA_002839085.1ScaffoldPGXK00000000SAMN06767763
HGW-Tenericutes-3
GCA_002839075.1ScaffoldPGXJ00000000SAMN06767764
HGW-Tenericutes-4
GCA_002839125.1ScaffoldPGXI00000000SAMN06767765
HGW-Tenericutes-5
GCA_002839055.1ScaffoldPGXH00000000SAMN06767766
HGW-Tenericutes-6
GCA_002839015.1ScaffoldPGXG00000000SAMN06767767
HGW-Tenericutes-7
GCA_002839005.1ContigPGXF00000000SAMN06767768
HGW-Tenericutes-8
GCA_002838935.1ScaffoldPGXE00000000SAMN06767769
HGW-Thermoplasmata-1
GCA_002838995.1ContigPGXD00000000SAMN06767770
HGW-Thermoplasmata-2
GCA_002842095.1ScaffoldPHCB00000000SAMN06767623
HGW-BRC1-1
GCA_002838945.1ScaffoldPGXB00000000SAMN06767772
HGW-Zixibacteria-1
SRA Data Details
ParameterValue
Data volume, Gbases130
Data volume, Mbytes87272

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