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Accession: PRJNA319796 ID: 319796

Ursus americanus (American black bear)

Whole-genome sequencing, de novo assembly, and RNAseq analysis reveals unique features of the kidney in the American black bear (Ursus americanus)

See Genome Information for Ursus americanus
we have performed high-throughput sequencing and a de novo assembly of the complete genome using both genomic DNA and RNA isolated from kidneys of American black bears (Ursus americanus) and made a first comparison of transcription profiles between kidneys collected in the spring (within weeks of waking up from hibernation) and the fall.
AccessionPRJNA319796
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismUrsus americanus[Taxonomy ID: 9643]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus; Ursus americanus
PublicationsDelisle I et al., "Conserved primers for rapid sequencing of the complete mitochondrial genome from carnivores, applied to three species of bears.", Mol Biol Evol, 2002 Mar;19(3):357-61
SubmissionRegistration date: 27-Jul-2018
Jackson Laboratory
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)2
SRA Experiments19
Publications
PubMed1
Other datasets
BioSample21
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases434
Data volume, Tbytes0.22
Related RefSeq Project
PRJNA795466 : Ursus americanus RefSeq project

Supplemental Content

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    Homo sapiens zinc finger protein 490 (ZNF490), mRNA
    gi|1519312489|ref|NM_020714.3|
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