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Accession: PRJNA319486 ID: 319486

sediment metagenome

Asgard archaea from sediments

This study aims at expanding the known diversity of archaea closely related to Lokiarchaeum. More...

Accession	PRJNA319486
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	sediment metagenome[Taxonomy ID: 749907] unclassified sequences; metagenomes; ecological metagenomes; sediment metagenome
Publications	Tamarit D et al., "A closed Candidatus Odinarchaeum chromosome exposes Asgard archaeal viruses.", Nat Microbiol, 2022 Jul;7(7):948-952 Zaremba-Niedzwiedzka K et al., "Asgard archaea illuminate the origin of eukaryotic cellular complexity.", Nature, 2017 Jan 19;541(7637):353-358
Grants	"Future Research Leaders" (Grant ID SSF-FFL5, Swedish Foundation for Strategic Research) "Marie Curie IIF" (Grant ID 331291, European Union) "Marie Curie IEF" (Grant ID 625521, European Union) "ERC Starting grant" (Grant ID 310039-PUZZLE_CELL, European Research Council)
Submission	Registration date: 10-Jan-2017 Uppsala University
Related Resources	One of the main activities in the Ettema lab is to explore the existing microbial diversity on our planet. In particular, we are interested in a relatively understudied branch in the Tree of Life, that of the Archaea. The Ettema-lab also aims to trace the identity of the ‘microbial ancestors’ of complex life on our planet using novel, revolutionary technology, in order to gain substantial insights in how complex life originated.
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	828
WGS master	4
Genomic DNA	1
SRA Experiments	1
Protein Sequences	16849
Publications
PubMed	2
PMC	1
Other datasets
BioSample	7
Assembly	5

Assembly details:

Assembly level

Number of Assemblies

Complete genome

Complete genome

Contig

1
4
5

Assembly	Level	WGS	Chrs	BioSample	Isolate	Taxonomy
GCA_001940755.1		MEHH00000000		SAMN04924818	AB_125	Candidatus Heimdallarchaeota archaeon AB_125
GCA_001940725.1		MDVR00000000		SAMN04924815	LC_2	Candidatus Heimdallarchaeota archaeon LC_2
GCA_001940645.1		MDVS00000000		SAMN04924817	LC_3	Candidatus Heimdallarchaeota archaeon LC_3
GCA_001940665.2			1	SAMN04924820	LCB_4	Candidatus Odinarchaeum yellowstonii
GCA_001940705.1		MEHG00000000		SAMN04924819	AB_25	Candidatus Thorarchaeota archaeon AB_25

SRA Data Details

Parameter	Value
Data volume, Gbases	1
Data volume, Mbytes	1226

Supplemental Content

Related information

Assembly
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BioSample
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Full text in PMC
PMC links
Genome
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Genomic DNA
Link to genomic DNA records
Nucleotide
Related Nucleotide entry
Protein
Related Proteins
PubMed
PubMed Links
SRA
All related SRA Experiments
Taxonomy
Taxonomy Links
WGS master
Link to WGS master record(s)

Related Resources

One of the main activities in the Ettema lab is to explore the existing microbial diversity on our planet. In particular, we are interested in a relatively understudied branch in the Tree of Life, that of the Archaea. The Ettema-lab also aims to trace the identity of the ‘microbial ancestors’ of complex life on our planet using novel, revolutionary technology, in order to gain substantial insights in how complex life originated.
One of the main activities in the Ettema lab is to explore the existing microbial diversity on our planet. In particular, we are interested in a relatively understudied branch in the Tree of Life, that of the Archaea. The Ettema-lab also aims to trace the identity of the ‘microbial ancestors’ of complex life on our planet using novel, revolutionary technology, in order to gain substantial insights in how complex life originated.

LinkOut to external resources

Dryad Digital Repository [Dryad Digital Repository]
Dryad Digital Repository
GOLD: Gp0220759 [Genomes On Line Database]
GOLD: Gp0220759
Genomes On Line Database
2740891986: Candidatus Odinarchaeum yellowstonii LCB_4 [Integrated Microbial Genomes]
2740891986: Candidatus Odinarchaeum yellowstonii LCB_4
Integrated Microbial Genomes
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

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