The cultivable fraction of mouse gut (ID 314378) - BioProject

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Accession: PRJEB10572 ID: 314378

The cultivable fraction of mouse gut

The mouse intestinal bacterial collection (miBC) represents a unique resource of cultivable bacteria isolates from mice that enables engineering of minimal gut consortia.

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This project is a component of the The Lactobacillus genus, a use case for Bactopia.

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216 additional projects are components of the The Lactobacillus genus, a use case for Bactopia..

The important role of mice as a model in research of microbe host interactions increased the need for determining the limits of such experiments due to host specificity and adaptation of several microbes. More...

Accession	PRJEB10572; ENA-SUBMISSION: ERA473426
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Publications	Lagkouvardos I et al., "The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota.", Nat Microbiol, 2016 Aug 8;1(10):16131
Submission	Registration date: 5-Mar-2016 Technical University Munich

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	259
WGS master	7
Genomic DNA	2
SRA Experiments	56
Protein Sequences	14102
Publications
PubMed	1
Other datasets
BioSample	61
Assembly	8

Assembly details:

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Assembly level

Number of Assemblies

Chromosome

Contig

Total

1
7
8

Assembly	WGS	Chrs	BioSample	Taxonomy
GCA_900248245.1	OFSM00000000		SAMEA3725555	Acetatifactor muris
GCA_003052625.1		2	SAMEA3725531	Escherichia coli
GCA_004345005.1	SMMX00000000		SAMEA3725514	Extibacter muris
GCA_950096485.1	CATNDW000000000		SAMEA112936472	uncultured Angelakisella sp.
GCA_950096855.1	CATNAQ000000000		SAMEA112936470	uncultured Christensenellaceae bacterium
GCA_950096535.1	CATNAR000000000		SAMEA112936471	uncultured Christensenellaceae bacterium
GCA_950097375.1	CATNDQ000000000		SAMEA112936473	uncultured Lachnospiraceae bacterium
GCA_950097405.1	CATNDZ000000000		SAMEA112936474	uncultured Muribaculaceae bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	118
Data volume, Mbytes	58227

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The cultivable fraction of mouse gut

The mouse intestinal bacterial collection (miBC) represents a unique resource of cultivable bacteria isolates from mice that enables engineering of minimal gut consortia.

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