Bacterial degraders of HMW DOM (ID 305749) - BioProject

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Accession: PRJNA305749 ID: 305749

Bacterial degraders of HMW DOM

Bacterial degraders of HMW DOM Genome sequencing and assembly

Screen and identify cultures obtained from dilution-to-extinction cultivation experiments enriched with high-molecular-weight (HMW) dissolved organic matter (DOM).

Accession	PRJNA305749
Data Type	Genome sequencing and assembly
Scope	Multispecies
Grants	"Investigating dissolved organic matter in the microbial loop" (Grant ID GBMF3298, Gordon and Betty Moore Foundation)
Submission	Registration date: 11-Dec-2015 Massachusetts Institute of Technology
Related Resources	Investigating dissolved organic matter in the microbial loop Elemental, isotopic, spectral and chromatographic data for HMWDOM
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	99183
WGS master	59
SRA Experiments	74
Protein Sequences	232206
Other datasets
BioSample	78
Assembly	59

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

59
59

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001635515.1	LWEI00000000	SAMN04580756	HI0003	Alcanivorax sp. HI0003
GCA_001635525.1	LWEJ00000000	SAMN04580757	HI0007	Alcanivorax sp. HI0007
GCA_001635565.1	LWEL00000000	SAMN04580759	HI0011	Alcanivorax sp. HI0011
GCA_001634705.1	LWEM00000000	SAMN04580760	HI0013	Alcanivorax sp. HI0013
GCA_001634835.1	LWET00000000	SAMN04580767	HI0033	Alcanivorax sp. HI0033
GCA_001634855.1	LWEU00000000	SAMN04580768	HI0035	Alcanivorax sp. HI0035
GCA_001634945.1	LWEZ00000000	SAMN04580773	HI0044	Alcanivorax sp. HI0044
GCA_001635175.1	LWFX00000000	SAMN04580797	HI0083	Alcanivorax sp. HI0083
GCA_001634695.1	LWEN00000000	SAMN04580761	HI0019	Erythrobacter sp. HI0019
GCA_001634715.1	LWEO00000000	SAMN04580762	HI0020	Erythrobacter sp. HI0020
GCA_001634795.1	LWES00000000	SAMN04580766	HI0028	Erythrobacter sp. HI0028
GCA_001634865.1	LWEV00000000	SAMN04580769	HI0037	Erythrobacter sp. HI0037
GCA_001634875.1	LWEW00000000	SAMN04580770	HI0038	Erythrobacter sp. HI0038
GCA_001635685.1	LWFF00000000	SAMN04580779	HI0063	Erythrobacter sp. HI0063
GCA_001634995.1	LWFO00000000	SAMN04580788	HI0074	Erythrobacter sp. HI0074
GCA_001635065.1	LWFR00000000	SAMN04580791	HI0077	Erythrobacter sp. HI0077
GCA_001635465.1	LWEG00000000	SAMN04580754	HI00D59	Erythrobacter sp. HI00D59
GCA_001635445.1	LWEE00000000	SAMN04580752	HI00S01	Halioglobus sp. HI00S01
GCA_001635005.1	LWFP00000000	SAMN04580789	HI0075	Oleibacter sp. HI0075
GCA_001635535.1	LWEK00000000	SAMN04580758	HI0009	Oleiphilus sp. HI0009
GCA_001634935.1	LWEY00000000	SAMN04580772	HI0043	Oleiphilus sp. HI0043
GCA_001635615.1	LWFB00000000	SAMN04580775	HI0050	Oleiphilus sp. HI0050
GCA_001635675.1	LWFE00000000	SAMN04580778	HI0061	Oleiphilus sp. HI0061
GCA_001635715.1	LWFG00000000	SAMN04580780	HI0065	Oleiphilus sp. HI0065
GCA_001635725.1	LWFH00000000	SAMN04580781	HI0066	Oleiphilus sp. HI0066
GCA_001635735.1	LWFI00000000	SAMN04580782	HI0067	Oleiphilus sp. HI0067
GCA_001635765.1	LWFJ00000000	SAMN04580783	HI0068	Oleiphilus sp. HI0068
GCA_001635795.1	LWFK00000000	SAMN04580784	HI0069	Oleiphilus sp. HI0069
GCA_001635805.1	LWFL00000000	SAMN04580785	HI0071	Oleiphilus sp. HI0071
GCA_001634975.1	LWFM00000000	SAMN04580786	HI0072	Oleiphilus sp. HI0072
GCA_001634985.1	LWFN00000000	SAMN04580787	HI0073	Oleiphilus sp. HI0073
GCA_001635075.1	LWFS00000000	SAMN04580792	HI0078	Oleiphilus sp. HI0078
GCA_001635105.1	LWFT00000000	SAMN04580793	HI0079	Oleiphilus sp. HI0079
GCA_001635135.1	LWFU00000000	SAMN04580794	HI0080	Oleiphilus sp. HI0080
GCA_001635145.1	LWFV00000000	SAMN04580795	HI0081	Oleiphilus sp. HI0081
GCA_001635215.1	LWFY00000000	SAMN04580798	HI0085	Oleiphilus sp. HI0085
GCA_001635225.1	LWFZ00000000	SAMN04580799	HI0086	Oleiphilus sp. HI0086
GCA_001635235.1	LWGA00000000	SAMN04580800	HI0117	Oleiphilus sp. HI0117
GCA_001635265.1	LWGB00000000	SAMN04580801	HI0118	Oleiphilus sp. HI0118
GCA_001635305.1	LWGD00000000	SAMN04580803	HI0122	Oleiphilus sp. HI0122
GCA_001635315.1	LWGE00000000	SAMN04580804	HI0123	Oleiphilus sp. HI0123
GCA_001635355.1	LWGF00000000	SAMN04580805	HI0125	Oleiphilus sp. HI0125
GCA_001635365.1	LWGG00000000	SAMN04580806	HI0128	Oleiphilus sp. HI0128
GCA_001635385.1	LWGI00000000	SAMN04580808	HI0130	Oleiphilus sp. HI0130
GCA_001635845.1	LWGJ00000000	SAMN04580809	HI0132	Oleiphilus sp. HI0132
GCA_001635835.1	LWGK00000000	SAMN04580810	HI0133	Oleiphilus sp. HI0133
GCA_001635595.1	LWFC00000000	SAMN04580776	HI0053	Pseudoalteromonas shioyasakiensis
GCA_001635625.1	LWFA00000000	SAMN04580774	HI0049	Roseovarius sp. HI0049
GCA_001635435.1	LWEF00000000	SAMN04580753	HI00D01	Stutzerimonas frequens
GCA_001634725.1	LWEP00000000	SAMN04580763	HI0021	Sulfitobacter sp. HI0021
GCA_001634785.1	LWEQ00000000	SAMN04580764	HI0023	Sulfitobacter sp. HI0023
GCA_001634775.1	LWER00000000	SAMN04580765	HI0027	Sulfitobacter sp. HI0027
GCA_001634885.1	LWEX00000000	SAMN04580771	HI0040	Sulfitobacter sp. HI0040
GCA_001635605.1	LWFD00000000	SAMN04580777	HI0054	Sulfitobacter sp. HI0054
GCA_001635055.1	LWFQ00000000	SAMN04580790	HI0076	Sulfitobacter sp. HI0076
GCA_001635155.1	LWFW00000000	SAMN04580796	HI0082	Sulfitobacter sp. HI0082
GCA_001635395.1	LWGH00000000	SAMN04580807	HI0129	Sulfitobacter sp. HI0129
GCA_001635285.1	LWGC00000000	SAMN04580802	HI0120	Thalassolituus sp. HI0120
GCA_001635455.1	LWEH00000000	SAMN04580755	HI00D65	Vibrio sp. HI00D65

SRA Data Details

Parameter	Value
Data volume, Gbases	6
Data volume, Mbytes	3395

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Bacterial degraders of HMW DOM

Bacterial degraders of HMW DOM Genome sequencing and assembly

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