Acinetobacter (ID 297777) - BioProject

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Accession: PRJNA297777 ID: 297777

Acinetobacter

Acinetobacter whole-genome sequencing for hospital epidemology

See Genome Information for Acinetobacter baumannii

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2226 additional projects are related by organism.

Using WGS to track hospital outbreaks of Acinetobacter baumannii

Accession	PRJNA297777
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Acinetobacter[Taxonomy ID: 469] Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter
Publications	Fitzpatrick MA et al., "Influence of ACB complex genospecies on clinical outcomes in a U.S. hospital with high rates of multidrug resistance.", J Infect, 2015 Feb;70(2):144-52 Ozer EA et al., "Draft Genome Sequence of Acinetobacter baumannii Strain ABBL099, a Multidrug-Resistant Clinical Outbreak Isolate with a Novel Multilocus Sequence Type.", Genome Announc, 2014 Sep 11;2(5)
Grants	"Mechanistic Studies of Patatin-like ToxinsBacterial Predictors of Severe Nosocomial PneumoniaExoU and the Pathogenesis of Pseudomonas Pneumonia" (Grant ID R01 AI053674, National Institute of Allergy and Infectious Diseases) "Validating targets in p. aeruginosa type III secretion using chemical probes" (Grant ID R01 AI099269, National Institute of Allergy and Infectious Diseases) "Translational Research Training in Infectious Diseases" (Grant ID T32 AI095207, National Institute of Allergy and Infectious Diseases) "Pseudomonas aeruginosa Genomic Islands and Virulence" (Grant ID R01 AI075191, National Institute of Allergy and Infectious Diseases) "Mechanism of Azithromycin Activity in Pseudomonas Infections" (Grant ID R21 AI088286, National Institute of Allergy and Infectious Diseases) "Mediators of infection in the Pseudomonas aeruginosa accessory genome" (Grant ID MRSG-13-220-01 - MPC, American Cancer Society)
Submission	Registration date: 5-Oct-2015 Northwestern University Feinberg School of Medicine
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	60880
WGS master	165
SRA Experiments	165
Protein Sequences	608548
Publications
PubMed	2
PMC	2
Other datasets
BioSample	165
Assembly	165

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

165
165

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001415465.1	LLGQ00000000	SAMN04145708	ABBL089	Acinetobacter baumannii
GCA_001415435.1	LLGN00000000	SAMN04145705	ABBL085	Acinetobacter baumannii
GCA_001415425.1	LLGM00000000	SAMN04145704	ABBL083	Acinetobacter baumannii
GCA_001415215.1	LLGL00000000	SAMN04145703	ABBL082	Acinetobacter baumannii
GCA_001415095.1	LLGD00000000	SAMN04145695	ABBL073	Acinetobacter baumannii
GCA_001415085.1	LLGB00000000	SAMN04145693	ABBL071	Acinetobacter baumannii
GCA_001415065.1	LLGA00000000	SAMN04145692	ABBL070	Acinetobacter baumannii
GCA_001414995.1	LLFT00000000	SAMN04145685	ABBL067h	Acinetobacter baumannii
GCA_001415025.1	LLFY00000000	SAMN04145690	ABBL068	Acinetobacter baumannii
GCA_001415015.1	LLFX00000000	SAMN04145689	ABBL067l	Acinetobacter baumannii
GCA_001414985.1	LLFW00000000	SAMN04145688	ABBL067k	Acinetobacter baumannii
GCA_001414905.1	LLFR00000000	SAMN04145683	ABBL067f	Acinetobacter baumannii
GCA_001414935.1	LLFS00000000	SAMN04145684	ABBL067g	Acinetobacter baumannii
GCA_001414925.1	LLFQ00000000	SAMN04145682	ABBL067e	Acinetobacter baumannii
GCA_001414915.1	LLFE00000000	SAMN04145670	ABBL059	Acinetobacter baumannii
GCA_001415165.1	LLGG00000000	SAMN04145698	ABBL076	Acinetobacter baumannii
GCA_001414885.1	LLFP00000000	SAMN04145681	ABBL067c	Acinetobacter baumannii
GCA_001414865.1	LLFH00000000	SAMN04145673	ABBL062	Acinetobacter baumannii
GCA_001414805.1	LLFO00000000	SAMN04145680	ABBL067b	Acinetobacter baumannii
GCA_001414815.1	LLFB00000000	SAMN04145667	ABBL056	Acinetobacter baumannii
GCA_001414785.1	LLFN00000000	SAMN04145679	ABBL067a	Acinetobacter baumannii
GCA_001414765.1	LLFM00000000	SAMN04145678	ABBL067	Acinetobacter baumannii
GCA_001414735.1	LLFL00000000	SAMN04145677	ABBL066	Acinetobacter baumannii
GCA_001414685.1	LLFI00000000	SAMN04145674	ABBL063	Acinetobacter baumannii
GCA_001414655.1	LLFG00000000	SAMN04145672	ABBL061	Acinetobacter baumannii
GCA_001414645.1	LLFF00000000	SAMN04145671	ABBL060	Acinetobacter baumannii
GCA_001414575.1	LLFC00000000	SAMN04145668	ABBL057	Acinetobacter baumannii
GCA_001414565.1	LLFA00000000	SAMN04145666	ABBL055	Acinetobacter baumannii
GCA_001417545.1	LLIR00000000	SAMN04145762	ABOB02	Acinetobacter baumannii
GCA_001417515.1	LLJG00000000	SAMN04145777	ABOBEN	Acinetobacter baumannii
GCA_001417495.1	LLJD00000000	SAMN04145774	ABOB12	Acinetobacter baumannii
GCA_001417485.1	LLIU00000000	SAMN04145765	ABOB04_a	Acinetobacter baumannii
GCA_001416625.1	LLIP00000000	SAMN04145760	ABBL149	Acinetobacter baumannii
GCA_001416635.1	LLIS00000000	SAMN04145763	ABOB03	Acinetobacter baumannii
GCA_001416585.1	LLIM00000000	SAMN04145757	ABBL144	Acinetobacter baumannii
GCA_001416565.1	LLIK00000000	SAMN04145755	ABBL142	Acinetobacter baumannii
GCA_001416555.1	LLID00000000	SAMN04145748	ABBL133	Acinetobacter baumannii
GCA_001416545.1	LLIA00000000	SAMN04145745	ABBL130	Acinetobacter baumannii
GCA_001416515.1	LLHZ00000000	SAMN04145744	ABBL129	Acinetobacter baumannii
GCA_001416495.1	LLJF00000000	SAMN04145776	ABOB16	Acinetobacter baumannii
GCA_001416475.1	LLJE00000000	SAMN04145775	ABOB15	Acinetobacter baumannii
GCA_001416465.1	LLJC00000000	SAMN04145773	ABOB11	Acinetobacter baumannii
GCA_001416425.1	LLJB00000000	SAMN04145772	ABOB10	Acinetobacter baumannii
GCA_001416705.1	LLIY00000000	SAMN04145769	ABOB07	Acinetobacter baumannii
GCA_001416715.1	LLJA00000000	SAMN04145771	ABOB09	Acinetobacter baumannii
GCA_001416665.1	LLIW00000000	SAMN04145767	ABOB06	Acinetobacter baumannii
GCA_001416655.1	LLIT00000000	SAMN04145764	ABOB04	Acinetobacter baumannii
GCA_001416395.1	LLIX00000000	SAMN04145768	ABOB06_a	Acinetobacter baumannii
GCA_001416415.1	LLIZ00000000	SAMN04145770	ABOB08	Acinetobacter baumannii
GCA_001416385.1	LLIV00000000	SAMN04145766	ABOB04_b	Acinetobacter baumannii
GCA_001416355.1	LLIQ00000000	SAMN04145761	ABOB01	Acinetobacter baumannii
GCA_001416315.1	LLIN00000000	SAMN04145758	ABBL147	Acinetobacter baumannii
GCA_001416305.1	LLIL00000000	SAMN04145756	ABBL143	Acinetobacter baumannii
GCA_001416275.1	LLIJ00000000	SAMN04145754	ABBL141	Acinetobacter baumannii
GCA_001416255.1	LLII00000000	SAMN04145753	ABBL140	Acinetobacter baumannii
GCA_001416235.1	LLIH00000000	SAMN04145752	ABBL138	Acinetobacter baumannii
GCA_001416225.1	LLIG00000000	SAMN04145751	ABBL137	Acinetobacter baumannii
GCA_001416165.1	LLIE00000000	SAMN04145749	ABBL134	Acinetobacter baumannii
GCA_001416155.1	LLIC00000000	SAMN04145747	ABBL132	Acinetobacter baumannii
GCA_001416145.1	LLIB00000000	SAMN04145746	ABBL131	Acinetobacter baumannii
GCA_001416115.1	LLHV00000000	SAMN04145740	ABBL125	Acinetobacter baumannii
GCA_001416095.1	LLHU00000000	SAMN04145739	ABBL124	Acinetobacter baumannii
GCA_001416075.1	LLHT00000000	SAMN04145738	ABBL123	Acinetobacter baumannii
GCA_001416035.1	LLHF00000000	SAMN04145724	ABBL106	Acinetobacter baumannii
GCA_001416005.1	LLHB00000000	SAMN04145720	ABBL101	Acinetobacter baumannii
GCA_001416015.1	LLHC00000000	SAMN04145721	ABBL102	Acinetobacter baumannii
GCA_001415985.1	LLHA00000000	SAMN04145719	ABBL100	Acinetobacter baumannii
GCA_001415965.1	LLGY00000000	SAMN04145716	ABBL097	Acinetobacter baumannii
GCA_001415835.1	LLHS00000000	SAMN04145737	ABBL122	Acinetobacter baumannii
GCA_001415815.1	LLHR00000000	SAMN04145736	ABBL121	Acinetobacter baumannii
GCA_001415805.1	LLHP00000000	SAMN04145734	ABBL118	Acinetobacter baumannii
GCA_001415785.1	LLHO00000000	SAMN04145733	ABBL117	Acinetobacter baumannii
GCA_001415765.1	LLHN00000000	SAMN04145732	ABBL116	Acinetobacter baumannii
GCA_001415735.1	LLHM00000000	SAMN04145731	ABBL115	Acinetobacter baumannii
GCA_001415715.1	LLHL00000000	SAMN04145730	ABBL114	Acinetobacter baumannii
GCA_001415695.1	LLHK00000000	SAMN04145729	ABBL113	Acinetobacter baumannii
GCA_001415665.1	LLHI00000000	SAMN04145727	ABBL110	Acinetobacter baumannii
GCA_001415645.1	LLHH00000000	SAMN04145726	ABBL109	Acinetobacter baumannii
GCA_001415615.1	LLHG00000000	SAMN04145725	ABBL107	Acinetobacter baumannii
GCA_001415595.1	LLHE00000000	SAMN04145723	ABBL105	Acinetobacter baumannii
GCA_001415915.1	LLGV00000000	SAMN04145713	ABBL094	Acinetobacter baumannii
GCA_001415875.1	LLHX00000000	SAMN04145742	ABBL127	Acinetobacter baumannii
GCA_001415535.1	LLGW00000000	SAMN04145714	ABBL095	Acinetobacter baumannii
GCA_001415515.1	LLGU00000000	SAMN04145712	ABBL093	Acinetobacter baumannii
GCA_001415505.1	LLGT00000000	SAMN04145711	ABBL092	Acinetobacter baumannii
GCA_001415385.1	LLGJ00000000	SAMN04145701	ABBL079	Acinetobacter baumannii
GCA_001415345.1	LLFZ00000000	SAMN04145691	ABBL069	Acinetobacter baumannii
GCA_001415355.1	LLGC00000000	SAMN04145694	ABBL072	Acinetobacter baumannii
GCA_001415325.1	LLFV00000000	SAMN04145687	ABBL067j	Acinetobacter baumannii
GCA_001415295.1	LLFU00000000	SAMN04145686	ABBL067i	Acinetobacter baumannii
GCA_001415275.1	LLGS00000000	SAMN04145710	ABBL091	Acinetobacter baumannii
GCA_001415255.1	LLGP00000000	SAMN04145707	ABBL088	Acinetobacter baumannii
GCA_001433695.1	LLEH00000000	SAMN04145664	ABBL053	Acinetobacter baumannii
GCA_001433675.1	LLDU00000000	SAMN04145651	ABBL040	Acinetobacter baumannii
GCA_001433655.1	LLDT00000000	SAMN04145650	ABBL039	Acinetobacter baumannii
GCA_001433355.1	LLEF00000000	SAMN04145662	ABBL051	Acinetobacter baumannii
GCA_001433335.1	LLEG00000000	SAMN04145663	ABBL052	Acinetobacter baumannii
GCA_001433275.1	LLDX00000000	SAMN04145654	ABBL043	Acinetobacter baumannii
GCA_001433265.1	LLDV00000000	SAMN04145652	ABBL041	Acinetobacter baumannii
GCA_001433245.1	LLED00000000	SAMN04145660	ABBL049	Acinetobacter baumannii
GCA_001433205.1	LLDZ00000000	SAMN04145656	ABBL045	Acinetobacter baumannii
GCA_001433155.1	LLDQ00000000	SAMN04145647	ABBL036	Acinetobacter baumannii
GCA_001433145.1	LLDO00000000	SAMN04145645	ABBL034	Acinetobacter baumannii
GCA_001433075.1	LLDI00000000	SAMN04145639	ABBL028	Acinetobacter baumannii
GCA_001433055.1	LLEE00000000	SAMN04145661	ABBL050	Acinetobacter baumannii
GCA_001433045.1	LLEC00000000	SAMN04145659	ABBL048	Acinetobacter baumannii
GCA_001433005.1	LLDS00000000	SAMN04145649	ABBL038	Acinetobacter baumannii
GCA_001433015.1	LLDY00000000	SAMN04145655	ABBL044	Acinetobacter baumannii
GCA_001432965.1	LLDP00000000	SAMN04145646	ABBL035	Acinetobacter baumannii
GCA_001432975.1	LLDR00000000	SAMN04145648	ABBL037	Acinetobacter baumannii
GCA_001432925.1	LLDK00000000	SAMN04145641	ABBL030	Acinetobacter baumannii
GCA_001432865.1	LLDH00000000	SAMN04145638	ABBL027	Acinetobacter baumannii
GCA_001432895.1	LLDJ00000000	SAMN04145640	ABBL029	Acinetobacter baumannii
GCA_001432825.1	LLCT00000000	SAMN04145624	ABBL013	Acinetobacter baumannii
GCA_001432845.1	LLDG00000000	SAMN04145637	ABBL026	Acinetobacter baumannii
GCA_001432785.1	LLCS00000000	SAMN04145623	ABBL012	Acinetobacter baumannii
GCA_001432745.1	LLCN00000000	SAMN04145618	ABBL007	Acinetobacter baumannii
GCA_001432755.1	LLCO00000000	SAMN04145619	ABBL008	Acinetobacter baumannii
GCA_001432705.1	LLCK00000000	SAMN04145615	ABBL004	Acinetobacter baumannii
GCA_001432685.1	LLCI00000000	SAMN04145613	ABBL001	Acinetobacter baumannii
GCA_001432665.1	LLDF00000000	SAMN04145636	ABBL025	Acinetobacter baumannii
GCA_001432625.1	LLDD00000000	SAMN04145634	ABBL023	Acinetobacter baumannii
GCA_001432585.1	LLDC00000000	SAMN04145633	ABBL022	Acinetobacter baumannii
GCA_001432595.1	LLDB00000000	SAMN04145632	ABBL021	Acinetobacter baumannii
GCA_001432545.1	LLCY00000000	SAMN04145629	ABBL018	Acinetobacter baumannii
GCA_001432535.1	LLDA00000000	SAMN04145631	ABBL020	Acinetobacter baumannii
GCA_001432525.1	LLCX00000000	SAMN04145628	ABBL017	Acinetobacter baumannii
GCA_001432445.1	LLCP00000000	SAMN04145620	ABBL009	Acinetobacter baumannii
GCA_001432455.1	LLCR00000000	SAMN04145622	ABBL011	Acinetobacter baumannii
GCA_001432425.1	LLCU00000000	SAMN04145625	ABBL014	Acinetobacter baumannii
GCA_001432385.1	LLCM00000000	SAMN04145617	ABBL006	Acinetobacter baumannii
GCA_001432375.1	LLCJ00000000	SAMN04145614	ABBL003	Acinetobacter baumannii
GCA_000738845.1	JPDG00000000	SAMN02867841	ABBL099	Acinetobacter baumannii
GCA_001415555.1	LLGZ00000000	SAMN04145717	ABBL098	Acinetobacter lactucae
GCA_001414835.1	LLFD00000000	SAMN04145669	ABBL058	Acinetobacter nosocomialis
GCA_001415395.1	LLGK00000000	SAMN04145702	ABBL080	Acinetobacter nosocomialis
GCA_001433095.1	LLDM00000000	SAMN04145643	ABBL032	Acinetobacter nosocomialis
GCA_001433125.1	LLDN00000000	SAMN04145644	ABBL033	Acinetobacter pittii
GCA_001433185.1	LLDW00000000	SAMN04145653	ABBL042	Acinetobacter pittii
GCA_001432635.1	LLDE00000000	SAMN04145635	ABBL024	Acinetobacter pittii
GCA_001432715.1	LLCL00000000	SAMN04145616	ABBL005	Acinetobacter pittii
GCA_001432835.1	LLCZ00000000	SAMN04145630	ABBL019	Acinetobacter pittii
GCA_001432775.1	LLCQ00000000	SAMN04145621	ABBL010	Acinetobacter pittii
GCA_001432435.1	LLCV00000000	SAMN04145626	ABBL015	Acinetobacter pittii
GCA_001432935.1	LLDL00000000	SAMN04145642	ABBL031	Acinetobacter pittii
GCA_001432505.1	LLCW00000000	SAMN04145627	ABBL016	Acinetobacter pittii
GCA_001433295.1	LLEA00000000	SAMN04145657	ABBL046	Acinetobacter pittii
GCA_001433225.1	LLEB00000000	SAMN04145658	ABBL047	Acinetobacter pittii
GCA_001415185.1	LLGH00000000	SAMN04145699	ABBL077	Acinetobacter pittii
GCA_001415175.1	LLGI00000000	SAMN04145700	ABBL078	Acinetobacter pittii
GCA_001415145.1	LLGF00000000	SAMN04145697	ABBL075	Acinetobacter pittii
GCA_001415105.1	LLGE00000000	SAMN04145696	ABBL074	Acinetobacter pittii
GCA_001414725.1	LLFK00000000	SAMN04145676	ABBL065	Acinetobacter pittii
GCA_001414705.1	LLFJ00000000	SAMN04145675	ABBL064	Acinetobacter pittii
GCA_001415865.1	LLHW00000000	SAMN04145741	ABBL126	Acinetobacter pittii
GCA_001415485.1	LLGR00000000	SAMN04145709	ABBL090	Acinetobacter pittii
GCA_001415245.1	LLGO00000000	SAMN04145706	ABBL086	Acinetobacter pittii
GCA_001415585.1	LLHD00000000	SAMN04145722	ABBL103	Acinetobacter pittii
GCA_001415685.1	LLHJ00000000	SAMN04145728	ABBL111	Acinetobacter pittii
GCA_001415935.1	LLGX00000000	SAMN04145715	ABBL096	Acinetobacter pittii
GCA_001415895.1	LLHY00000000	SAMN04145743	ABBL128	Acinetobacter pittii
GCA_001416335.1	LLIO00000000	SAMN04145759	ABBL148	Acinetobacter pittii
GCA_001416065.1	LLHQ00000000	SAMN04145735	ABBL120	Acinetobacter pittii
GCA_001416185.1	LLIF00000000	SAMN04145750	ABBL135	Acinetobacter pittii
GCA_001414585.1	LLEZ00000000	SAMN04145665	ABBL054	Acinetobacter soli

SRA Data Details

Parameter	Value
Data volume, Gbases	258
Data volume, Tbytes	0.18

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Acinetobacter whole-genome sequencing for hospital epidemology

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