Xiphophorus couchianus (ID 290781) - BioProject

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Accession: PRJNA290781 ID: 290781

Xiphophorus couchianus (Monterrey platyfish)

Xiphophorus couchianus Genome sequencing and assembly

See Genome Information for Xiphophorus couchianus

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3 additional projects are related by organism.

The sequence and assembly of Xiphophporus couchianus will allow investigations of interspecies hybrids, especially those of X. maculatus, to determine the genetics of underlying spontaneous and induced tumorigenesis.

Accession	PRJNA290781
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Xiphophorus couchianus[Taxonomy ID: 32473] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus; Xiphophorus couchianus
Publications	Zhang K et al., "The complete mitochondrial genome of the Monterrey platyfish (Xiphophorus couchianus).", Mitochondrial DNA A DNA Mapp Seq Anal, 2016 Nov;27(6):4453-4454 Shen Y et al., "X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species.", BMC Genomics, 2016 Jan 7;17:37
Grants	"Enhanced Development of the Xiphophorus Model System" (Grant ID RD240D-11120, National Institute of Health)
Submission	Registration date: 13-Nov-2015 - McDonnell Genome Institute - Washington University School of Medicine - McDonnell Genome Institute - Washington University School of Medicine
Related Resources	Xiphophorus Genetic Stock Center
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	25
WGS master	1
SRA Experiments	7
Publications
PubMed	2
PMC	1
Other datasets
BioSample	2
Assembly	1
Supplementary data
BioNano map	2

Assembly details:

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Assembly	Level	WGS	Chrs	BioSample	Taxonomy
GCA_001444195.3	Chromosome	LNCC00000000	24	SAMN03922721	Xiphophorus couchianus

SRA Data Details

Parameter	Value
Data volume, Gbases	222
Data volume, Tbytes	0.11

Related RefSeq Project

PRJNA516883 : Xiphophorus couchianus RefSeq Genome sequencing and assembly

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Xiphophorus couchianus (Monterrey platyfish)

Xiphophorus couchianus Genome sequencing and assembly

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