Polynucleobacter (ID 278737) - BioProject

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Accession: PRJNA278737 ID: 278737

Polynucleobacter

Polynucleobacter Genome sequencing and assembly

Genome analysis

Accession	PRJNA278737
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Polynucleobacter[Taxonomy ID: 44013] Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobacter
Publications (total 4) Less...	Hahn MW et al., "Opening a next-generation black box: Ecological trends for hundreds of species-like taxa uncovered within a single bacterial >99% 16S rRNA operational taxonomic unit.", Mol Ecol Resour, 2021 Oct;21(7):2471-2485 More... Hahn MW et al., "Opening a next-generation black box: Ecological trends for hundreds of species-like taxa uncovered within a single bacterial >99% 16S rRNA operational taxonomic unit.", Mol Ecol Resour, 2021 Oct;21(7):2471-2485 Hoetzinger M et al., "Continental-Scale Gene Flow Prevents Allopatric Divergence of Pelagic Freshwater Bacteria.", Genome Biol Evol, 2021 Mar 1;13(3) Hoetzinger M et al., "Polynucleobacter paneuropaeus sp. nov., characterized by six strains isolated from freshwater lakes located along a 3000 km north-south cross-section across Europe.", Int J Syst Evol Microbiol, 2019 Jan;69(1):203-213 Published online: Hahn M et al., "Opening a next-generation black box: ecological trends for hundreds of species-like taxa uncovered within a single bacterial >99% 16S rRNA operational taxonomic unit", name, 2021; Less...
Grants	"Ecological diversification within the subspecies Polynucleobacter necessarius ssp. asymbioticus and environmental ecotype sorting" (Grant ID I482-B09, Austrian Science Fund)
Submission	Registration date: 7-Nov-2016 University of Innsbruck
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	215
WGS master	117
Genomic DNA	35
Protein Sequences	68714
Publications
PubMed	3
PMC	3
Other datasets
BioSample	181
Assembly	152

Assembly details:

Download

Assembly level

Number of Assemblies

27
8
36
81
152

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_018881545.1	JACVQD000000000		SAMN04081345	UK-Pondora-W15	Polynucleobacter alcilacus
GCA_018882205.1	JACVOU000000000		SAMN08383908	AP-Basta-1000A-D1	Polynucleobacter bastaniensis
GCA_018881755.1	JACVPS000000000		SAMN04086672	MWH-Mekk-B1	Polynucleobacter finlandensis
GCA_018881835.1	JACVPO000000000		SAMN08383911	MWH-Hall10	Polynucleobacter hallstattensis
GCA_018882155.1	JACVPA000000000		SAMN08383915	AP-Mumm-500A-B3	Polynucleobacter nymphae
GCA_018685255.1		1	SAMN14212622	AP-Inari4-40-G4	Polynucleobacter paneuropaeus
GCA_018685235.1		1	SAMN14212623	AP-Kaivos-20-C1	Polynucleobacter paneuropaeus
GCA_018685215.1		1	SAMN14212625	AP-Kaivos-20-H11	Polynucleobacter paneuropaeus
GCA_018685195.1		1	SAMN14212629	AP-Matth-80-A6	Polynucleobacter paneuropaeus
GCA_018685175.1		1	SAMN14212632	AP-Ram-20A-G9	Polynucleobacter paneuropaeus
GCA_018685155.1		1	SAMN14212633	AP-Ram-40-B10	Polynucleobacter paneuropaeus
GCA_018685135.1		1	SAMN14212635	AP-RamGG-20A-D9	Polynucleobacter paneuropaeus
GCA_018685115.1		1	SAMN14212638	AP-RamGG-20A-H1	Polynucleobacter paneuropaeus
GCA_018685095.1		1	SAMN14212640	AP-Roav5-40-G5	Polynucleobacter paneuropaeus
GCA_018685075.1		1	SAMN14212642	AP-Roav5-60-C2	Polynucleobacter paneuropaeus
GCA_018685055.1		1	SAMN14212645	AP-SaBe1-20-G4	Polynucleobacter paneuropaeus
GCA_018685035.1		1	SAMN14212646	AP-SiebGG-20-C3	Polynucleobacter paneuropaeus
GCA_018685015.1		1	SAMN14212648	AP-SiebGG-20-E3	Polynucleobacter paneuropaeus
GCA_018684995.1		1	SAMN14212650	AP-SiebGG-20-E6	Polynucleobacter paneuropaeus
GCA_018684975.1		1	SAMN14212651	AP-SiebGG-20-E7	Polynucleobacter paneuropaeus
GCA_018684955.1		1	SAMN14212652	AP-Vara3-400C-C6	Polynucleobacter paneuropaeus
GCA_018684935.1		1	SAMN14212653	AP-Vara3-400D-D1	Polynucleobacter paneuropaeus
GCA_018684915.1		1	SAMN14212660	FUKU-SW-23	Polynucleobacter paneuropaeus
GCA_018684895.1		1	SAMN14212664	JS-Aci1-20-B10	Polynucleobacter paneuropaeus
GCA_018684875.1		1	SAMN14212666	JS-Inari2-20-E3	Polynucleobacter paneuropaeus
GCA_018684855.1		1	SAMN14212667	JS-Inari2-40-A2	Polynucleobacter paneuropaeus
GCA_018684835.1		1	SAMN14212668	JS-Jaav-20-B9	Polynucleobacter paneuropaeus
GCA_018684815.1		1	SAMN14212677	JS-Pas2-20-D6	Polynucleobacter paneuropaeus
GCA_018684795.1		1	SAMN14212680	JS-Safj-400a-B1	Polynucleobacter paneuropaeus
GCA_018684775.1		1	SAMN14212683	JS-Vilge-20-A6	Polynucleobacter paneuropaeus
GCA_018684755.1		1	SAMN14212684	JS-Vilge-20-A7	Polynucleobacter paneuropaeus
GCA_018684735.1		1	SAMN14212687	MG-25-Pas1-F1	Polynucleobacter paneuropaeus
GCA_018684715.1		1	SAMN14212690	MWH-Gerlos1-1	Polynucleobacter paneuropaeus
GCA_018684695.1		1	SAMN14212692	MWH-PRW10-1	Polynucleobacter paneuropaeus
GCA_018684675.1		1	SAMN14212693	MWH-Valk-A4	Polynucleobacter paneuropaeus
GCA_018684655.1		1	SAMN14212697	TSB-Sco10W11	Polynucleobacter paneuropaeus
GCA_018706085.1	JAANHE000000000		SAMN14212608	AP-AinPum-20-D8	Polynucleobacter paneuropaeus
GCA_018706065.1	JAANHG000000000		SAMN14212606	AP-AinPum-20-C6	Polynucleobacter paneuropaeus
GCA_018706045.1	JAANHD000000000		SAMN14212609	AP-AinPum-20-E2	Polynucleobacter paneuropaeus
GCA_018706005.1	JAANHC000000000		SAMN14212611	AP-ClouGG-20-A8	Polynucleobacter paneuropaeus
GCA_018706025.1	JAANHF000000000		SAMN14212607	AP-AinPum-20-D2	Polynucleobacter paneuropaeus
GCA_018705985.1	JAANHB000000000		SAMN14212612	AP-ClouGG-20-B4	Polynucleobacter paneuropaeus
GCA_018705945.1	JAANHA000000000		SAMN14212613	AP-ClouGG-20-C3	Polynucleobacter paneuropaeus
GCA_018705925.1	JAANGX000000000		SAMN14212616	AP-ClouGG-20-F1	Polynucleobacter paneuropaeus
GCA_018705935.1	JAANGZ000000000		SAMN14212614	AP-ClouGG-20-C5	Polynucleobacter paneuropaeus
GCA_018705905.1	JAANGY000000000		SAMN14212615	AP-ClouGG-20-D9	Polynucleobacter paneuropaeus
GCA_018705885.1	JAANGW000000000		SAMN14212618	AP-EnzGG-20-H5	Polynucleobacter paneuropaeus
GCA_018705865.1	JAANGV000000000		SAMN14212620	AP-Hunz-20-A7	Polynucleobacter paneuropaeus
GCA_018705835.1	JAANGT000000000		SAMN14212626	AP-Latsch-80-F12	Polynucleobacter paneuropaeus
GCA_018705825.1	JAANGU000000000		SAMN14212624	AP-Kaivos-20-H1	Polynucleobacter paneuropaeus
GCA_018705785.1	JAANGR000000000		SAMN14212634	AP-RamGG-20A-D10	Polynucleobacter paneuropaeus
GCA_018705795.1	JAANGS000000000		SAMN14212628	AP-Matth-20-A9	Polynucleobacter paneuropaeus
GCA_018705765.1	JAANGQ000000000		SAMN14212636	AP-RamGG-20A-F11	Polynucleobacter paneuropaeus
GCA_018705745.1	JAANGP000000000		SAMN14212639	AP-Roav5-40-G11	Polynucleobacter paneuropaeus
GCA_018705685.1	JAANGO000000000		SAMN14212641	AP-Roav5-40-G8	Polynucleobacter paneuropaeus
GCA_018705705.1	JAANGN000000000		SAMN14212643	AP-Roav5-60-C8	Polynucleobacter paneuropaeus
GCA_018705695.1	JAANGM000000000		SAMN14212649	AP-SiebGG-20-E4	Polynucleobacter paneuropaeus
GCA_018705665.1	JAANGL000000000		SAMN14212654	AP-YLGG-20-B7	Polynucleobacter paneuropaeus
GCA_018705645.1	JAANGJ000000000		SAMN14212656	AP-YLGG-20-D8	Polynucleobacter paneuropaeus
GCA_018705595.1	JAANGI000000000		SAMN14212657	AP-YLGG-20-G6	Polynucleobacter paneuropaeus
GCA_018705625.1	JAANGK000000000		SAMN14212655	AP-YLGG-20-D4	Polynucleobacter paneuropaeus
GCA_018705585.1	JAANGG000000000		SAMN14212610	AP-Bors-40-G2	Polynucleobacter paneuropaeus
GCA_018705565.1	JAANGH000000000		SAMN14212658	Bars-3	Polynucleobacter paneuropaeus
GCA_018705535.1	JAANGF000000000		SAMN14212617	AP-EnzGG-20-H1	Polynucleobacter paneuropaeus
GCA_018705525.1	JAANGE000000000		SAMN14212659	FUKU-NE-20	Polynucleobacter paneuropaeus
GCA_018705495.1	JAANGC000000000		SAMN14212661	HuttF10W10	Polynucleobacter paneuropaeus
GCA_018705485.1	JAANGD000000000		SAMN14212619	AP-Hunz-20-A2	Polynucleobacter paneuropaeus
GCA_018705465.1	JAANGB000000000		SAMN14212662	HuttF15W3	Polynucleobacter paneuropaeus
GCA_018705445.1	JAANGA000000000		SAMN14212621	AP-Hutt-20-G10	Polynucleobacter paneuropaeus
GCA_018705425.1	JAANFZ000000000		SAMN14212663	HuttNr.2F15a+NSY	Polynucleobacter paneuropaeus
GCA_018705385.1	JAANFX000000000		SAMN14212665	JS-Aci1-20-C7	Polynucleobacter paneuropaeus
GCA_018705395.1	JAANFY000000000		SAMN14212669	JS-Jaav-40-B5	Polynucleobacter paneuropaeus
GCA_018705365.1	JAANFV000000000		SAMN14212673	JS-Muodo-80-B3	Polynucleobacter paneuropaeus
GCA_018705325.1	JAANFU000000000		SAMN14212674	JS-Pas1-20-G7	Polynucleobacter paneuropaeus
GCA_018705335.1	JAANFW000000000		SAMN14212671	JS-Kaakku-80-A2	Polynucleobacter paneuropaeus
GCA_018705305.1	JAANFT000000000		SAMN14212676	JS-Pas2-20-B7	Polynucleobacter paneuropaeus
GCA_018705285.1	JAANFS000000000		SAMN14212681	JS-Suoal-20-A1	Polynucleobacter paneuropaeus
GCA_018705245.1	JAANFR000000000		SAMN14212682	JS-Suoal-20-A4	Polynucleobacter paneuropaeus
GCA_018705235.1	JAANFQ000000000		SAMN14212670	JS-Kaakku-80-A1	Polynucleobacter paneuropaeus
GCA_018705225.1	JAANFP000000000		SAMN14212672	JS-Kaija-80-A1	Polynucleobacter paneuropaeus
GCA_018705195.1	JAANFO000000000		SAMN14212627	AP-Matth-20-A10	Polynucleobacter paneuropaeus
GCA_018705185.1	JAANFN000000000		SAMN14212686	MG-22-Aci1-F1	Polynucleobacter paneuropaeus
GCA_018705165.1	JAANFM000000000		SAMN14212689	MWH-Adler-W21	Polynucleobacter paneuropaeus
GCA_018705135.1	JAANFL000000000		SAMN14212691	MWH-Gerlos5-1	Polynucleobacter paneuropaeus
GCA_018705125.1	JAANFK000000000		SAMN14212694	MWH-Valk-D1	Polynucleobacter paneuropaeus
GCA_018705105.1	JAANFI000000000		SAMN14212630	AP-Npozz1-10B-G10	Polynucleobacter paneuropaeus
GCA_018705075.1	JAANFJ000000000		SAMN14212631	AP-NPozz1-20-C2	Polynucleobacter paneuropaeus
GCA_018705065.1	JAANFH000000000		SAMN14212675	JS-Pas2-20-A10	Polynucleobacter paneuropaeus
GCA_018705035.1	JAANFG000000000		SAMN14212688	MG-8-Puso-13	Polynucleobacter paneuropaeus
GCA_018705025.1	JAANFF000000000		SAMN14212637	AP-RamGG-20A-F8	Polynucleobacter paneuropaeus
GCA_018705005.1	JAANFD000000000		SAMN14212679	JS-Roav2-60-F8	Polynucleobacter paneuropaeus
GCA_018704975.1	JAANFE000000000		SAMN14212678	JS-Roav1-40-G3	Polynucleobacter paneuropaeus
GCA_018704965.1	JAANFC000000000		SAMN14212699	UB-Rupi-W24	Polynucleobacter paneuropaeus
GCA_018704945.1	JAANFA000000000		SAMN14212696	TSB-SaBe1AW7	Polynucleobacter paneuropaeus
GCA_018704925.1	JAANFB000000000		SAMN14212644	AP-SaBe1-20-A5	Polynucleobacter paneuropaeus
GCA_018704905.1	JAANEZ000000000		SAMN14212647	AP-SiebGG-20-E10	Polynucleobacter paneuropaeus
GCA_018704875.1	JAANEY000000000		SAMN14212695	SM1-W8	Polynucleobacter paneuropaeus
GCA_018704865.1	JAANEX000000000		SAMN14212698	UB-Lampi-W7	Polynucleobacter paneuropaeus
GCA_018704845.1	JAANEV000000000		SAMN14212701	UK3W14Kol1	Polynucleobacter paneuropaeus
GCA_018704825.1	JAANEW000000000		SAMN14212700	UK3W13	Polynucleobacter paneuropaeus
GCA_018704795.1	JAANEU000000000		SAMN14212685	JS-Vitta2-80-C6	Polynucleobacter paneuropaeus
GCA_018704785.1	JAANET000000000		SAMN14212605	AP-AinPum-20-C5	Polynucleobacter paneuropaeus
GCA_003289495.1	QMCG00000000		SAMN06014615	MWH-UK1W16	Polynucleobacter paneuropaeus
GCA_003289545.1	QMCH00000000		SAMN04086652	FUKU-NW11	Polynucleobacter paneuropaeus
GCA_003261295.1		1	SAMN02724733	MWH-Creno-4B4	Polynucleobacter paneuropaeus
GCA_003261275.1		1	SAMN04086669	MWH-CNW20-3	Polynucleobacter paneuropaeus
GCA_003261255.1		1	SAMN03430798	UB-Kaiv-W7	Polynucleobacter paneuropaeus
GCA_003261235.1		1	SAMN03430691	MG-25-Pas1-D2	Polynucleobacter paneuropaeus
GCA_018881715.1	JACVPW000000000		SAMN03400205	Ross1-W9	Polynucleobacter parvulilacunae
GCA_018882445.1	JACVOM000000000		SAMN13615231	15G-AUS-farblos	Polynucleobacter sp. 15G-AUS-farblos
GCA_018882385.1	JACVON000000000		SAMN13615232	30F-ANTBAC	Polynucleobacter sp. 30F-ANTBAC
GCA_018882405.1	JACVOO000000000		SAMN13615233	31A-FELB	Polynucleobacter sp. 31A-FELB
GCA_018882365.1	JACVOP000000000		SAMN13615234	71A-WALBACH	Polynucleobacter sp. 71A-WALBACH
GCA_018882465.1	JACVOK000000000		SAMN13615235	73C-SIWE	Polynucleobacter sp. 73C-SIWE
GCA_018882325.1	JACVOQ000000000		SAMN13615236	78F-HAINBA	Polynucleobacter sp. 78F-HAINBA
GCA_018882295.1	JACVOR000000000		SAMN13615237	80A-SIGWE	Polynucleobacter sp. 80A-SIGWE
GCA_018882415.1	JACVOL000000000		SAMN13615238	86C-FISCH	Polynucleobacter sp. 86C-FISCH
GCA_018882335.1	JACVOS000000000		SAMN13615240	AM-25C3	Polynucleobacter sp. AM-25C3
GCA_018882285.1	JACVOT000000000		SAMN16057897	AM-26B4	Polynucleobacter sp. AM-26B4
GCA_018882245.1	JACVOV000000000		SAMN11609353	AP-Capit-er-40B-B4	Polynucleobacter sp. AP-Capit-er-40B-B4
GCA_018882265.1	JACVOW000000000		SAMN11608969	AP-Feld-500C-C5	Polynucleobacter sp. AP-Feld-500C-C5
GCA_018882215.1	JACVOX000000000		SAMN16057898	AP-Kaivos-20-H2	Polynucleobacter sp. AP-Kaivos-20-H2
GCA_018882185.1	JACVOY000000000		SAMN11609514	AP-Latsch-80-C2	Polynucleobacter sp. AP-Latsch-80-C2
GCA_018882125.1	JACVOZ000000000		SAMN11609474	AP-Melu-500A-A1	Polynucleobacter sp. AP-Melu-500A-A1
GCA_018882145.1	JACVPC000000000		SAMN16057899	AP-RePozz3-80-G7	Polynucleobacter sp. AP-RePozz3-80-G7
GCA_018882085.1	JACVPB000000000		SAMN11608971	AP-Reno-20A-A9	Polynucleobacter sp. AP-Reno-20A-A9
GCA_018882095.1	JACVPD000000000		SAMN13615244	CS-Odin-A6	Polynucleobacter sp. CS-Odin-A6
GCA_018882045.1	JACVPG000000000		SAMN04086660	Fuers-14	Polynucleobacter sp. Fuers-14
GCA_018882015.1	JACVPH000000000		SAMN08383910	JS-Fieb-80-E5	Polynucleobacter sp. JS-Fieb-80-E5
GCA_018881965.1	JACVPI000000000		SAMN11608213	JS-Polo-80-F4	Polynucleobacter sp. JS-Polo-80-F4
GCA_018881975.1	JACVPJ000000000		SAMN11608957	JS-Safj-400b-B2	Polynucleobacter sp. JS-Safj-400b-B2
GCA_018881925.1	JACVPL000000000		SAMN11608783	Latsch14-2	Polynucleobacter sp. Latsch14-2
GCA_018881905.1	JACVPM000000000		SAMN04086677	MG-27-Goln-C1	Polynucleobacter sp. MG-27-Goln-C1
GCA_018881855.1	JACVPN000000000		SAMN11607712	MWH-Berg-3C6	Polynucleobacter sp. MWH-Berg-3C6
GCA_018881885.1	JACXSA000000000		SAMN04086676	MWH-Creno-3A4	Polynucleobacter sp. MWH-Creno-3A4
GCA_018881815.1	JACVPP000000000		SAMN16057902	MWH-HuK1	Polynucleobacter sp. MWH-HuK1
GCA_018881795.1	JACVPQ000000000		SAMN04086653	MWH-Jannik1A5	Polynucleobacter sp. MWH-Jannik1A5
GCA_018881775.1	JACVPR000000000		SAMN16057903	MWH-Loch1C5	Polynucleobacter sp. MWH-Loch1C5
GCA_018881695.1	JACVPT000000000		SAMN16057904	MWH-Post4-6-1	Polynucleobacter sp. MWH-Post4-6-1
GCA_001870385.1	LZMR00000000		SAMN05214349	MWH-Tro8-2-5-gr	Polynucleobacter sp. MWH-Tro8-2-5-gr
GCA_018881735.1	JACVPU000000000		SAMN08383916	Nonnen-W13	Polynucleobacter sp. Nonnen-W13
GCA_018881675.1	JACVPV000000000		SAMN04086663	P1-05-14	Polynucleobacter sp. P1-05-14
GCA_001870365.1	LZMQ00000000		SAMN05214352	QLW-P1DATA-2	Polynucleobacter sp. QLW-P1DATA-2
GCA_018881655.1	JACVPX000000000		SAMN11608900	Tro8-14-1	Polynucleobacter sp. Tro8-14-1
GCA_018881635.1	JACVPY000000000		SAMN04086658	UB-Piko-W3	Polynucleobacter sp. UB-Piko-W3
GCA_018881605.1	JACVPZ000000000		SAMN11608208	UB-Tiil-W10	Polynucleobacter sp. UB-Tiil-W10
GCA_018881595.1	JACVQA000000000		SAMN04086655	UK-Gri1-W3	Polynucleobacter sp. UK-Gri1-W3
GCA_018881575.1	JACVQB000000000		SAMN04086657	UK-Kesae-W10	Polynucleobacter sp. UK-Kesae-W10
GCA_018881505.1	JACVQC000000000		SAMN11607711	UK-Mo-2m-Kol15	Polynucleobacter sp. UK-Mo-2m-Kol15
GCA_018882005.1	JACVPE000000000		SAMN04086659	es-GGE-1	Polynucleobacter sp. es-GGE-1
GCA_018882055.1	JACVPF000000000		SAMN08383913	es-MAR-4	Polynucleobacter sp. es-MAR-4
GCA_018881935.1	JACVPK000000000		SAMN13615246	Klost1-W25	Polynucleobacter wuianus

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Polynucleobacter Genome sequencing and assembly

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