sediment metagenome (ID 262935) - BioProject

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Accession: PRJNA262935 ID: 262935

sediment metagenome

Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 Metagenome

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This project is a component of the Rifle Sediment Metagenome

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15 additional projects are components of the Rifle Sediment Metagenome.

Rifle CO subsurface soil sediment (16ft).

Accession	PRJNA262935
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	sediment metagenome[Taxonomy ID: 749907] unclassified sequences; metagenomes; ecological metagenomes; sediment metagenome
Publications	Hug LA et al., "Aquifer environment selects for microbial species cohorts in sediment and groundwater.", ISME J, 2015 Aug;9(8):1846-56
Submission	Registration date: 13-Nov-2015 DOE Joint Genome Institute
Related Resources	GOLD Card For Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 Metagenome
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	732
WGS master	8
Genomic DNA	155
SRA Experiments	1
Protein Sequences	22934
Publications
PubMed	1
PMC	1
Other datasets
BioSample	9
Assembly	8

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

7
1
8

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_001443445.1	LDXN00000000	SAMN03462094	CSP1-2	Candidatus Dadabacteria bacterium CSP1-2
GCA_001443385.1	LDXP00000000	SAMN03462096	CSP1-6	Candidatus Rokubacteria bacterium CSP1-6
GCA_001443485.1	LDXQ00000000	SAMN03462097	CSP1-3	Candidatus Sysuimicrobiota bacterium CSP1-3
GCA_001443375.1	LDXM00000000	SAMN03462093	CSP1-4	Chloroflexi bacterium CSP1-4
GCA_001443455.1	LDXO00000000	SAMN03462095	CSP1-8	Deltaproteobacteria bacterium CSP1-8
GCA_001443365.1	LDXL00000000	SAMN03462092	CSP1-1	Thaumarchaeota archaeon CSP1-1
GCA_001443495.1	LDXR00000000	SAMN03462098	CSP1-5	candidate division NC10 bacterium CSP1-5
GCA_001443395.1	LDXK00000000	SAMN03462091	CSP1-7	candidate division WWE3 bacterium CSP1-7

SRA Data Details

Parameter	Value
Data volume, Gbases	43
Data volume, Mbytes	27856

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Nucleotide
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Protein
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PubMed
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SRA
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Taxonomy
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WGS master
Link to WGS master record(s)

Related Resources

GOLD Card For Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 Metagenome
GOLD Card For Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 Metagenome

LinkOut to external resources

GOLD: Gp0054797 [Genomes On Line Database]
GOLD: Gp0054797
Genomes On Line Database
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

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sediment metagenome
sediment metagenome
Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 Metagenome

BioProject
candidate division WWE3 bacterium RAAC2_WWE3_1
candidate division WWE3 bacterium RAAC2_WWE3_1
WWE3 - Small genome and sparse metabolism of a sediment-associated bacterium from a candidate phylum

BioProject
candidate division Zixibacteria bacterium RBG-1
candidate division Zixibacteria bacterium RBG-1
candidate division ZIXI bacterium RBG-1 Metagenomic Assembly

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