Lactuca sativa cultivar:Salinas (ID 173551) - BioProject

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Accession: PRJNA173551 ID: 173551

Lactuca sativa cultivar:Salinas (garden lettuce)

Lactuca sativa cultivar:Salinas Genome sequencing and assembly

See Genome Information for Lactuca sativa

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81 additional projects are related by organism.

This project is focused on generating a high quality draft whole genome sequence of Lactuca sativa that is an economically important, representative species of the Compositae family. Cultivar Salinas and its derivatives are some of the most widely grown genotypes worldwide.

Accession	PRJNA173551
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Lactuca sativa[Taxonomy ID: 4236] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca; Lactuca sativa
Publications	Kozik A et al., "The alternative reality of plant mitochondrial DNA: One ring does not rule them all.", PLoS Genet, 2019 Aug;15(8):e1008373 Reyes-Chin-Wo S et al., "Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce.", Nat Commun, 2017 Apr 12;8:14953
Submission	Registration date: 9-Jan-2018 Lettuce Genome Sequencing Consortium - UC Davis Genome Center - Beijing Genomics institute - BGI-Shenzhen - UC Davis Genome Center
Related Resources	Lettuce genome resources
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	21
WGS master	1
SRA Experiments	73
Protein Sequences	44232
Publications
PubMed	2
PMC	2
Other datasets
BioSample	12
Assembly	1

Assembly details:

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Assembly	Level	WGS	Chrs	BioSample	Taxonomy
GCA_002870075.4	Chromosome	NBSK00000000	9	SAMN33010172	Lactuca sativa

SRA Data Details

Parameter	Value
Data volume, Gbases	1,118
Data volume, Tbytes	0.78

Related RefSeq Project

PRJNA432228 : Lactuca sativa cultivar:Salinas RefSeq Genome sequencing

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Lactuca sativa cultivar:Salinas (garden lettuce)

Lactuca sativa cultivar:Salinas Genome sequencing and assembly

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