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Accession: PRJNA167727 ID: 167727

sediment metagenome

Rifle Sediment Metagenome

The objective of the research at the Rifle site is to gain a comprehensive and mechanistic understanding of the microbial factors and associated geochemistry controlling uranium mobility at the field scale so that DOE can confidently remediate uranium plumes as well as support stewardship of uranium-contaminated sites.
AccessionPRJNA167727
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismsediment metagenome[Taxonomy ID: 749907]
unclassified sequences; metagenomes; ecological metagenomes; sediment metagenome
PublicationsHandley KM et al., "Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community.", ISME J, 2013 Apr;7(4):800-16
Grants
  • "Microbial community genomics in the subsurface of a contaminated groundwater site." (Grant ID DE-AC02-05CH11231, Department of Energy)
SubmissionRegistration date: 13-Nov-2012
University of California, Berkeley
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)5573
WGS master2
Genomic DNA152
SRA Experiments2
Protein Sequences2795
Publications
PubMed1
PMC1
Other datasets
BioSample2
PopSet2
Assembly2
Genome assemblies, organelles and plasmids:
Assembly GCA_000315215.1 :
NameGenBank
Whole Genome Shotgun AssemblyAMQJ00000000
Assembly GCA_003242895.1 :
NameGenBank
Whole Genome Shotgun AssemblyQKMY00000000
SRA Data Details
ParameterValue
Data volume, Gbases96
Data volume, Mbytes63577

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