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Accession: PRJNA114691 ID: 114691

groundwater metagenome

Rifle CO Subsurface Groundwater Metagenome

The objective of the research at the Rifle site is to gain a comprehensive and mechanistic understanding of the microbial factors and associated geochemistry controlling uranium mobility at the field scale so that DOE can confidently remediate uranium plumes as well as support stewardship of uranium-contaminated sites.

Collected from a contaminated aquifer bioremediation site.

AccessionPRJNA114691
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismgroundwater metagenome[Taxonomy ID: 717931]
unclassified sequences; metagenomes; ecological metagenomes; groundwater metagenome
PublicationsWrighton KC et al., "Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla.", Science, 2012 Sep 28;337(6102):1661-5
Grants
  • "Microbial community genomics in the subsurface of a contaminated groundwater site." (Grant ID DE-AC02-05CH11231, Department of Energy, SBR)
SubmissionRegistration date: 26-Sep-2012
University of California, Berkeley
RelevanceEnvironmental
Locus Tag PrefixACD
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)31091
WGS master1
SRA Experiments3
Protein Sequences108541
Publications
PubMed1
Other datasets
BioSample4
Assembly1
Genome assemblies, organelles and plasmids:
Assembly GCA_000299275.1 :
NameGenBank
Whole Genome Shotgun AssemblyAMFJ00000000
SRA Data Details
ParameterValue
Data volume, Gbases23
Data volume, Mbytes14956

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