ID 1127199 - BioProject

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Accession: PRJNA1127199 ID: 1127199

Diverse vaginal isolate genomes

This BioProject includes the whole genome sequences of diverse bacterial species isolated from the vaginal microbiome. More...

Accession	PRJNA1127199
Data Type	Genome sequencing
Scope	Multispecies
Publications	Published online: Zhu M et al., "VaginalLactobacillusfatty acid response mechanisms reveal a novel strategy for bacterial vaginosis treatment", bioRxiv, 2023;
Submission	Registration date: 23-Jun-2024 MIT
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	63
WGS master	44
Genomic DNA	19
Protein Sequences	25675
Other datasets
BioSample	66
Assembly	63

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

19
44
63

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_040428135.1	JBETXC000000000		SAMN41996398	0795_578_1_1_BHK4	Fannyhessea vaginae
GCA_042995305.1		1	SAMN41996405	0809_588_1_1_BHK4	Gardnerella piotii
GCA_042994895.1		1	SAMN41996406	0756_546_1_1_CBA7	Gardnerella swidsinskii
GCA_040427895.1	JBETXK000000000		SAMN41996409	ATCC 14018	Gardnerella vaginalis ATCC 14018 = JCM 11026
GCA_040427915.1	JBETXJ000000000		SAMN41996407	0756_546_1_1_BHK10	Gardnerella vaginalis
GCA_042038945.1		1	SAMN41996408	1683_1263_1_CBA4	Gardnerella vaginalis
GCA_040427905.1	JBETXI000000000		SAMN41996404	0795_578_1_1_LKV6_S404	Hoylesella timonensis
GCA_040428035.1	JBETXH000000000		SAMN41996403	SMB_14_F02_G09_S839	Hoylesella timonensis
GCA_040428825.1	JBETVT000000000		SAMN41996347	194_Q3_2	Lactobacillus crispatus
GCA_040428725.1	JBETVX000000000		SAMN41996351	197_Q2_b2	Lactobacillus crispatus
GCA_040428805.1	JBETVU000000000		SAMN41996348	194_F1_1	Lactobacillus crispatus
GCA_040428785.1	JBETVV000000000		SAMN41996349	194_Q2_3	Lactobacillus crispatus
GCA_040428755.1	JBETVW000000000		SAMN41996350	197_Q4_a	Lactobacillus crispatus
GCA_040428735.1	JBETVY000000000		SAMN41996352	241_B_1	Lactobacillus crispatus
GCA_040428695.1	JBETVZ000000000		SAMN41996353	241_F1_2	Lactobacillus crispatus
GCA_040428645.1	JBETWB000000000		SAMN41996356	415_F3_2	Lactobacillus crispatus
GCA_040428625.1	JBETWD000000000		SAMN41996358	294_Q3_1	Lactobacillus crispatus
GCA_040428635.1	JBETWA000000000		SAMN41996354	241_F3_3	Lactobacillus crispatus
GCA_040428615.1	JBETWC000000000		SAMN41996357	294_F1_2	Lactobacillus crispatus
GCA_040428585.1	JBETWF000000000		SAMN41996360	233	Lactobacillus crispatus
GCA_040428575.1	JBETWE000000000		SAMN41996359	0422_293_1_1_MRS10	Lactobacillus crispatus
GCA_040428525.1	JBETWH000000000		SAMN41996362	0421_295_1_1_MRS1	Lactobacillus crispatus
GCA_040428535.1	JBETWG000000000		SAMN41996361	0055_051_1_1_MRS12	Lactobacillus crispatus
GCA_040428515.1	JBETWI000000000		SAMN41996363	0795_578_1_1_MRS1	Lactobacillus crispatus
GCA_040428475.1	JBETWJ000000000		SAMN41996364	JV-V01	Lactobacillus crispatus
GCA_043002145.1		1	SAMN41996382	CM2267_MRS2	Lactobacillus gasseri
GCA_040428245.1	JBETWW000000000		SAMN41996383	194_F1_d	Lactobacillus gasseri
GCA_040428225.1	JBETWX000000000		SAMN41996384	0795_578_1_1_MRSI4	Lactobacillus gasseri
GCA_043005555.1		1	SAMN41996368	0809_588_1_1_MRS1	Lactobacillus iners
GCA_043004745.1		1	SAMN41996371	0998_735_1_CBA_90B_S800	Lactobacillus iners
GCA_043003935.1		1	SAMN41996373	Liners_2503_V10-0	Lactobacillus iners
GCA_043003265.1		1	SAMN41996375	UP11_143_D	Lactobacillus iners
GCA_043002695.1		1	SAMN41996378	E3_1733.1310.1_CBA1	Lactobacillus iners
GCA_040428215.1	JBETWU000000000		SAMN41996380	E4_1683.1263.1_CBA2	Lactobacillus iners
GCA_040428485.1	JBETWK000000000		SAMN41996365	LEAF_2053A-b	Lactobacillus iners
GCA_040428455.1	JBETWL000000000		SAMN41996366	LEAF_3008A	Lactobacillus iners
GCA_040428425.1	JBETWM000000000		SAMN41996367	0991_727_w8_CBAc	Lactobacillus iners
GCA_040428415.1	JBETWN000000000		SAMN41996369	JKR_P1_89_A12	Lactobacillus iners
GCA_040428385.1	JBETWO000000000		SAMN41996370	E5_1732_1307_1_BDMRSCQ12_S286	Lactobacillus iners
GCA_040428365.1	JBETWQ000000000		SAMN41996374	ATCC 55195	Lactobacillus iners ATCC 55195
GCA_040428355.1	JBETWP000000000		SAMN41996372	0861_630_1_1_CBA7_S775	Lactobacillus iners
GCA_040428325.1	JBETWR000000000		SAMN41996376	0861_630_1_1_MRSI1	Lactobacillus iners
GCA_040428305.1	JBETWS000000000		SAMN41996377	E7_1841.1391.1_CBA1	Lactobacillus iners
GCA_040428265.1	JBETWT000000000		SAMN41996379	E3_1733.1310.1_CBA5	Lactobacillus iners
GCA_040428235.1	JBETWV000000000		SAMN41996381	E5_1732.1307.1_BDMRSCQ4	Lactobacillus iners
GCA_040428165.1	JBETWZ000000000		SAMN41996389	188_Q2_1	Lactobacillus jensenii
GCA_040428175.1	JBETWY000000000		SAMN41996385	CM2268_MRS4	Lactobacillus jensenii
GCA_040428125.1	JBETXA000000000		SAMN41996391	188_Q3c	Lactobacillus jensenii
GCA_043001555.1		1	SAMN41996386	0795_578_1_1_MRS2	Lactobacillus jensenii
GCA_043000965.1		1	SAMN41996387	188_F1_4	Lactobacillus jensenii
GCA_043000305.1		1	SAMN41996388	188_Q1_1	Lactobacillus jensenii
GCA_042999335.1		1	SAMN41996390	188_Q2_2	Lactobacillus jensenii
GCA_042997765.1		1	SAMN41996392	0422_293_1_1_MRS1	Lactobacillus jensenii
GCA_042997415.1		1	SAMN41996393	CM2267_MRS1	Lactobacillus mulieris
GCA_042996645.1		1	SAMN41996396	294_F1_4-1	Lactobacillus mulieris
GCA_042995895.1		1	SAMN41996397	294_F1_4-2	Lactobacillus mulieris
GCA_040428115.1	JBETXB000000000		SAMN41996395	241_S1_1	Lactobacillus mulieris
GCA_040428025.1	JBETXD000000000		SAMN41996399	JKR_P2_14_F02	Prevotella amnii
GCA_040428085.1	JBETXE000000000		SAMN41996400	ATCC 29303	Prevotella bivia
GCA_040427935.1	JBETXF000000000		SAMN41996401	0756_546_1_1_LKV5_S442	Prevotella disiens
GCA_040428015.1	JBETXG000000000		SAMN41996402	JKR_P2_35_C05	Prevotella melaninogenica
GCA_042033325.1		1	SAMN41996411	CCUG 41628T	Sneathia sanguinegens
GCA_042035775.1		1	SAMN41996410	CCUG_64370	Sneathia vaginalis

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