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Accession: PRJNA1120858 ID: 1120858

Single-Cell RNA Sequencing of Peripheral Blood Mononuclear Cells From Acute Myocardial Infarction (human)

See Genome Information for Homo sapiens
Background: Acute myocardial infarction (AMI) can occur in patients with atherosclerotic disease, with or without plaque rupture. Previous studies have indicated a set of immune responses to plaque rupture. However, the specific circulating immune cell subsets that mediate inflammatory plaque rupture remain elusive. Methods: Ten AMI patients were enrolled in our study (five with and five without plaque rupture; plaque characteristics were identified by optical coherence tomography). By single-cell RNA sequencing, we analyzed the transcriptomic profile of peripheral blood mononuclear cells. Results: We identified 27 cell clusters among 82,550 cells, including monocytes, T cells, NK cells, B cells, megakaryocytes, and CD34+ cells. Classical and non-classical monocytes constitute the major inflammatory cell types, and pro-inflammatory genes such as CCL5, TLR7, and CX3CR1 were significantly upregulated in patients with plaque rupture, while the neutrophil activation and degranulation genes FPR2, MMP9, and CLEC4D were significantly expressed in the intermediate monocytes derived from patients without plaque rupture. We also found that CD4+ effector T cells may contribute to plaque rupture by producing a range of cytokines and inflammatory_x0002_related chemokines, while CD8+ effector T cells express more effector molecules in patients without plaque rupture, such as GZMB, GNLY, and PRF1, which may contribute to the progress of plaque erosion. Additionally, NK and B cells played a significant role in activating inflammatory cells and promoting chemokine production in the plaque rupture. Cell?cell communication elaborated characteristics in signaling pathways dominated by inflammatory activation of classical monocytes in patients with plaque rupture. Conclusions: Our studies demonstrate that the circulating immune cells of patients with plaque rupture exhibit highly pro-inflammatory characteristics, while plaque erosion is mainly associated with intermediate monocyte amplification, neutrophil activation, and degranulation. These findings may provide novel targets for the precise treatment of patients with AMI. Overall design: A total of 20 patients with AMI who underwent percutaneous coronary intervention (PCI) at the Shanghai Tongji Hospital from April to December 2020 were included in the study. AMI was classified as STEMI and non-ST segment elevation MI (NSTEMI). The STEMI diagnosis was based on typical chest pain and new ST-segment elevation of at least two contiguous leads >0.1 mV or new left bundle-branch block on the 12-lead electrocardiogram (ECG) and elevated cardiac markers (troponin T/I or creatine kinase-MB) (6). On the 12-lead ECG, NSTEMI was identified as persistent angina accompanied by elevated cardiac markers but without the ST-segment elevation. Exclusion criteria were a left ventricular ejection fraction <30%; severe infectious disease, sepsis, or autoimmune disease; or malignant tumor or life expectancy of <1 year. All patients gave written informed consent, and the ethics committee of the Shanghai Tongji Hospital approved the study protocol. This research was in line with the Declaration of Helsinki. Ten AMI patients were enrolled in our study (five with and five without plaque rupture; plaque characteristics were identified by optical coherence tomography). By single-cell RNA sequencing, we analyzed the transcriptomic profile of peripheral blood mononuclear cells.
AccessionPRJNA1120858; GEO: GSE269269
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
Publications
  • Qian J et al., "Corrigendum: Single-cell RNA sequencing of peripheral blood mononuclear cells from acute myocardial infarction.", Front Immunol, 2024;15:1462970
  • Qian J et al., "Single-Cell RNA Sequencing of Peripheral Blood Mononuclear Cells From Acute Myocardial Infarction.", Front Immunol, 2022;13:908815
SubmissionRegistration date: 6-Jun-2024
Department of Cardiology, Tongji Hospital of Tongji University
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments10
Publications
PubMed2
PMC2
Other datasets
BioSample10
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes559
SRA Data Details
ParameterValue
Data volume, Gbases996
Data volume, Tbytes0.37

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