Amphidinium carterae (ID 1110228) - BioProject

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Accession: PRJNA1110228 ID: 1110228

Amphidinium carterae

Amphidinium carterae CCMP1314 genome sequencing with and without antibiotic treatment.

Accession	PRJNA1110228
Data Type	Genome sequencing and assembly, Raw sequence reads, Genome sequencing, Assembly
Scope	Multispecies
Publications	Judd M et al., "Long-Read Sequencing Unlocks New Insights into the Amphidinium carterae Microbiome.", Mar Drugs, 2024 Jul 27;22(8)
Submission	Registration date: 10-May-2024 University of Maryland Center for Environmental Science
Relevance	Environmental

Project Data:

Assembly level

Number of Assemblies

15
15

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_042140245.1	1	SAMN41976903	ac1	Ahrensia marina
GCA_042140275.1	1	SAMN41976904	ac2	Algihabitans albus
GCA_042140265.1	1	SAMN41976905	ac3	Cyclobacterium xiamenense
GCA_042140175.1	1	SAMN41976910	ac8	Flagellimonas aurea
GCA_042140235.1	1	SAMN41976906	ac4	Hoeflea alexandrii
GCA_042140115.1	1	SAMN41976914	ac12	Labrenzia sp. ac12
GCA_042140225.1	1	SAMN41976907	ac5	Marinobacter adhaerens
GCA_042140215.1	1	SAMN41976908	ac6	Marivirga tractuosa
GCA_042140085.1	1	SAMN41976917	ac15	Nitratireductor sp. ac15
GCA_042140145.1	1	SAMN41976911	ac9	Oceanicaulis alexandrii
GCA_042140135.1	1	SAMN41976912	ac10	Oceaniradius stylonematis
GCA_042140185.1	1	SAMN41976909	ac7	Phycisphaerales bacterium ac7
GCA_042140125.1	1	SAMN41976913	ac11	Rhodophyticola porphyridii
GCA_042140105.1	1	SAMN41976915	ac13	Roseovarius mucosus
GCA_042140095.1	1	SAMN41976916	ac14	Seohaeicola saemankumensis

Parameter	Value
Data volume, Gbases	152
Data volume, Tbytes	0.13

Supplemental Content

Amphidinium carterae
Amphidinium carterae
Amphidinium carterae genome assembly including bacteria Genome sequencing and assembly

BioProject
Crassulaceae tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer...
Crassulaceae tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast.
PopSet: 2130729674

PopSet
Microbe sample from Rossellomorea marisflavi
Microbe sample from Rossellomorea marisflavi

biosample
Saxifragales ATPase alpha subunit (atp1) gene, partial cds; mitochondrial.
Saxifragales ATPase alpha subunit (atp1) gene, partial cds; mitochondrial.
PopSet: 130076675

PopSet
nck-associated protein 5-like [Mus musculus]
nck-associated protein 5-like [Mus musculus]
gi|49457863|ref|NP_001001884.1|

Protein

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