ID 1107577 - BioProject

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Accession: PRJNA1107577 ID: 1107577

Full length sequences and assemblies of genomes from arctic ground squirrel gut microbes

A collection of whole genome sequences and assemblies from microbial isolates cultured from hibernators for the purpose of defining the gut microbes potential contributions to host physiology.

Accession	PRJNA1107577
Data Type	Genome sequencing
Scope	Multispecies
Grants	"Institutional Development Award (IDeA)" (Grant ID P20GM103395, National Institute of General Medical Sciences of the National Institutes of Health) "Centers of Biomedical Research Excellence (COBRE)" (Grant ID P20GM130443, National Institute of General Medical Sciences of the National Institutes of Health)
Submission	Registration date: 3-May-2024 University of Alaska Anchorage
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	36
WGS master	24
Genomic DNA	12
SRA Experiments	36
Protein Sequences	45832
Other datasets
BioSample	36
Assembly	36

Assembly details:

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Assembly level

Number of Assemblies

Chromosome

Contig

Total

12
24
36

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_040702965.1		1	SAMN41327304	AR004	Actinomyces timonensis
GCA_041227215.1	JBGFSU000000000		SAMN41327282	AR510	Alkalicoccobacillus gibsonii
GCA_040702985.1		1	SAMN41327292	AN1009	Alloscardovia omnicolens
GCA_041227105.1	JBGFQW000000000		SAMN41327290	AN1005	Bacillales bacterium AN1005
GCA_040703005.1		1	SAMN41327288	M1002	Bacillus amyloliquefaciens
GCA_040703065.1		1	SAMN41327269	AR001	Bacillus infantis
GCA_040703025.1		1	SAMN41327283	M501	Bacillus safensis
GCA_041085315.1		1	SAMN41327278	AR505	Bacillus safensis
GCA_041227085.1	JBGFSS000000000		SAMN41327296	AR3001	Bacillus safensis
GCA_041227155.1	JBGFST000000000		SAMN41327284	M502	Bacillus safensis
GCA_041227145.1	JBGFSP000000000		SAMN41327286	AN502	Bacteroides sp. AN502(2024)
GCA_040719375.1	JBFDTP000000000		SAMN41327303	AN503	Clostridium sp. AN503
GCA_040719395.1	JBFDTK000000000		SAMN41327293	AN1013	Enterococcus hirae
GCA_040719405.1	JBFDTM000000000		SAMN41327274	AN402	Enterococcus sp. AN402
GCA_039832115.1	JBDOIK000000000		SAMN41327298	M3003	Escherichia coli
GCA_039832205.1	JBDOII000000000		SAMN41327300	AR3005	Escherichia coli
GCA_039832255.1	JBDOIL000000000		SAMN41327294	AN2001	Escherichia coli
GCA_040703015.1		1	SAMN41327285	AR601	Escherichia coli
GCA_041085325.1		1	SAMN41327276	AN405	Intestinimonas butyriciproducens
GCA_041227125.1	JBGFSO000000000		SAMN41327287	AN1001	Lactobacillus sp. AN1001
GCA_040703055.1		1	SAMN41327270	AR002	Paenibacillus amylolyticus
GCA_039832045.1	JBDOIJ000000000		SAMN41327299	M3004	Paenibacillus amylolyticus
GCA_039832095.1	JBDOIN000000000		SAMN41327281	AR509	Paenibacillus amylolyticus
GCA_040719345.1	JBFDTJ000000000		SAMN41327302	AR3006B	Paenibacillus pabuli
GCA_039831995.1	JBDOIO000000000		SAMN41327279	AR506	Paenibacillus pabuli
GCA_040702995.1		1	SAMN41327291	AN1007	Paenibacillus sp. AN1007
GCA_041227025.1	JBGFSQ000000000		SAMN41327301	AR3006A	Peribacillus frigoritolerans
GCA_041227065.1	JBGFSR000000000		SAMN41327297	AR3002	Peribacillus frigoritolerans
GCA_039832165.1	JBDOIM000000000		SAMN41327289	M1003	Priestia megaterium
GCA_040702975.1		1	SAMN41327295	AN2004	Roseburia hominis
GCA_040719485.1	JBFDTO000000000		SAMN41327271	AR003	Staphylococcus capitis
GCA_040719385.1	JBFDTL000000000		SAMN41327275	AN404	Staphylococcus epidermidis
GCA_040719455.1	JBFDTN000000000		SAMN41327272	AR005	Streptococcus pneumoniae
GCA_040703035.1		1	SAMN41327280	AR507	Terribacillus aidingensis
GCA_039832015.1	JBDOIQ000000000		SAMN41327273	AN401	Thomasclavelia ramosa
GCA_039832195.1	JBDOIP000000000		SAMN41327277	AN406	[Clostridium] innocuum

SRA Data Details

Parameter	Value
Data volume, Gbases	18
Data volume, Mbytes	16902

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Full length sequences and assemblies of genomes from arctic ground squirrel gut microbes

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