Bos indicus (ID 1096733) - BioProject

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Accession: PRJNA1096733 ID: 1096733

Bos indicus (zebu cattle)

Bos indicus Genome sequencing

See Genome Information for Bos indicus

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101 additional projects are related by organism.

Gut microbiome of Bos indicus (cow) at different temperature

Accession	PRJNA1096733
Data Type	Genome sequencing
Scope	Multispecies
Organism	Bos indicus[Taxonomy ID: 9915] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos indicus
Submission	Registration date: 5-Apr-2024 University of Illinois at Urbana Champaign
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	92
SRA Experiments	12
Other datasets
BioSample	104
Assembly	92

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

58
34
92

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_040272995.1	JBELYE000000000	SAMN41804261	241_Win.6	Aerococcus urinaeequi
GCA_040274665.1	JBEMAT000000000	SAMN41804193	233_Win.1	Aerococcus urinaeequi
GCA_040274645.1	JBEMAG000000000	SAMN41804206	234_Win.5	Aerococcus urinaeequi
GCA_040274445.1	JBEMBJ000000000	SAMN41804177	231_Win.1	Aerococcus urinaeequi
GCA_040274135.1	JBELZP000000000	SAMN41804224	238_Win.7	Aerococcus urinaeequi
GCA_040274095.1	JBELYW000000000	SAMN41804243	240_Win.4	Aerococcus urinaeequi
GCA_040274175.1	JBELZC000000000	SAMN41804237	240_Sum.9	Alkalibacterium sp.
GCA_040274025.1	JBELZL000000000	SAMN41804228	240_Sum.10	Arthrobacter sp.
GCA_040273995.1	JBELYP000000000	SAMN41804250	241_Sum.2	Arthrobacter sp.
GCA_040274585.1	JBEMAN000000000	SAMN41804199	234_Sum.2	Arthrobacter sp.
GCA_040274805.1	JBEMBF000000000	SAMN41804181	231_Win.5	Candidatus Limivicinus sp.
GCA_040273775.1	JBELZN000000000	SAMN41804226	238_Win.9	Candidatus Limivicinus sp.
GCA_040273615.1	JBELYS000000000	SAMN41804247	240_Win.8	Carnobacterium inhibens
GCA_040273295.1	JBELZU000000000	SAMN41804219	238_Win.2	Carnobacterium inhibens
GCA_040274785.1	JBEMBE000000000	SAMN41804182	231_Win.6	Carnobacterium inhibens
GCA_040274945.1	JBEMAR000000000	SAMN41804195	233_Win.3	Carnobacterium sp.
GCA_040274425.1	JBEMBC000000000	SAMN41804184	231_Win.8	Carnobacterium sp.
GCA_040274915.1	JBEMBG000000000	SAMN41804180	231_Win.4	Clostridia bacterium
GCA_040274565.1	JBEMAE000000000	SAMN41804208	234_Win.7	Clostridia bacterium
GCA_040273175.1	JBELYF000000000	SAMN41804260	241_Win.5	Desemzia incerta
GCA_040273795.1	JBELZS000000000	SAMN41804221	238_Win.4	Desemzia incerta
GCA_040274705.1	JBEMBH000000000	SAMN41804179	231_Win.3	Desemzia incerta
GCA_040274315.1	JBEMAX000000000	SAMN41804189	233_Sum.5	Desemzia incerta
GCA_040275065.1	JBEMAA000000000	SAMN41804212	238_Sum.2	Desemzia incerta
GCA_041477385.1	JBGNUQ000000000	SAMN41804217	238_Win.10	Enterobacteriaceae bacterium
GCA_040274275.1	JBELYN000000000	SAMN41804252	241_Sum.4	Enterococcus casseliflavus
GCA_040275085.1	JBEMAD000000000	SAMN41804209	234_Win.8	Enterococcus casseliflavus
GCA_040272935.1	JBELYC000000000	SAMN41804263	241_Win.8	Enterococcus casseliflavus
GCA_040274155.1	JBELZF000000000	SAMN41804234	240_Sum.6	Eubacteriales bacterium
GCA_040273875.1	JBELZV000000000	SAMN41804218	238_Win.11	Eubacteriales bacterium
GCA_040274055.1	JBELYX000000000	SAMN41804242	240_Win.3	Eubacteriales bacterium
GCA_040275145.1	JBEMAB000000000	SAMN41804211	238_Sum.1	Exiguobacterium indicum
GCA_040273455.1	JBELYV000000000	SAMN41804244	240_Win.5	Exiguobacterium indicum
GCA_040274075.1	JBELZJ000000000	SAMN41804230	240_Sum.2	Lachnospiraceae bacterium
GCA_040275005.1	JBELZW000000000	SAMN41804216	238_Win.1	Leuconostoc lactis
GCA_040274905.1	JBEMBD000000000	SAMN41804183	231_Win.7	Leuconostoc mesenteroides
GCA_040273955.1	JBELZQ000000000	SAMN41804223	238_Win.6	Leuconostoc mesenteroides
GCA_040273195.1	JBELYQ000000000	SAMN41804249	241_Sum.1	Lysinibacillus sp.
GCA_040273675.1	JBELYY000000000	SAMN41804241	240_Win.2	Mammaliicoccus vitulinus
GCA_040273635.1	JBELZB000000000	SAMN41804238	240_Win.1	Methanobrevibacter sp.
GCA_040274115.1	JBELZD000000000	SAMN41804236	240_Sum.8	Niallia sp.
GCA_040275245.1	JBEMAC000000000	SAMN41804210	234_Win.9	Pantoea agglomerans
GCA_040273415.1	JBEMAV000000000	SAMN41804191	233_Sum.7	Priestia megaterium
GCA_040273115.1	JBELYH000000000	SAMN41804258	241_Win.3	Priestia megaterium
GCA_040274615.1	JBEMAF000000000	SAMN41804207	234_Win.6	Priestia megaterium
GCA_040274505.1	JBEMBN000000000	SAMN41804173	231_Sum.2	Priestia megaterium
GCA_040273355.1	JBELZR000000000	SAMN41804222	238_Win.5	Pseudomonas atacamensis
GCA_040274255.1	JBELYU000000000	SAMN41804245	240_Win.6	Pseudomonas qingdaonensis
GCA_040274215.1	JBELYL000000000	SAMN41804254	241_Sum.6	Pseudomonas simiae
GCA_040274605.1	JBEMAL000000000	SAMN41804201	234_Sum.4	Pseudomonas simiae
GCA_040274885.1	JBEMBO000000000	SAMN41804172	231_Sum.1	Pseudomonas simiae
GCA_040273185.1	JBELZY000000000	SAMN41804214	238_Sum.4	Pseudomonas simiae
GCA_040275105.1	JBEMAK000000000	SAMN41804202	234_Win.1	Pseudomonas sp.
GCA_040274385.1	JBEMBA000000000	SAMN41804186	233_Sum.2	Psychrobacillus psychrodurans
GCA_040273315.1	JBELZT000000000	SAMN41804220	238_Win.3	Psychrobacillus psychrotolerans
GCA_040273535.1	JBELYT000000000	SAMN41804246	240_Win.7	Psychrobacillus sp.
GCA_040274015.1	JBEMAI000000000	SAMN41804204	234_Win.3	Psychrobacillus sp.
GCA_040274845.1	JBEMBI000000000	SAMN41804178	231_Win.2	Psychrobacillus sp.
GCA_040274765.1	JBEMAY000000000	SAMN41804188	233_Sum.4	Psychrobacillus sp.
GCA_040274965.1	JBEMAS000000000	SAMN41804194	233_Win.2	Psychrobacter alimentarius
GCA_040273915.1	JBELYG000000000	SAMN41804259	241_Win.4	Psychrobacter alimentarius
GCA_040273515.1	JBELZA000000000	SAMN41804239	240_Win.10	Psychrobacter alimentarius
GCA_040275025.1	JBELZX000000000	SAMN41804215	238_Sum.5	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
GCA_040274335.1	JBEMAW000000000	SAMN41804190	233_Sum.6	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
GCA_040274405.1	JBEMBK000000000	SAMN41804176	231_Sum.5	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
GCA_040273495.1	JBELZK000000000	SAMN41804229	240_Sum.11	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
GCA_040273035.1	JBELYK000000000	SAMN41804255	241_Sum.7	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
GCA_040273895.1	JBELZI000000000	SAMN41804231	240_Sum.3	Ruminococcus sp.
GCA_040274685.1	JBEMAU000000000	SAMN41804192	233_Sum.8	Ruminococcus sp.
GCA_040274195.1	JBELZE000000000	SAMN41804235	240_Sum.7	Saccharopolyspora rectivirgula
GCA_040273925.1	JBELYD000000000	SAMN41804262	241_Win.7	Solibacillus isronensis
GCA_040274545.1	JBEMAJ000000000	SAMN41804203	234_Win.2	Solibacillus isronensis
GCA_040274985.1	JBEMBM000000000	SAMN41804174	231_Sum.3	Solibacillus isronensis
GCA_040274865.1	JBEMAZ000000000	SAMN41804187	233_Sum.3	Solibacillus sp.
GCA_040274825.1	JBEMAM000000000	SAMN41804200	234_Sum.3	Solibacillus sp.
GCA_040274725.1	JBEMAQ000000000	SAMN41804196	233_Win.4	Solibacillus sp.
GCA_040273975.1	JBELYZ000000000	SAMN41804240	240_Win.11	Solibacillus sp.
GCA_040274235.1	JBELYO000000000	SAMN41804251	241_Sum.3	Solibacillus sp.
GCA_040274355.1	JBELYR000000000	SAMN41804248	240_Win.9	Solibacillus sp.
GCA_040274295.1	JBELYJ000000000	SAMN41804256	241_Win.1	Solibacillus sp.
GCA_040273135.1	JBELYI000000000	SAMN41804257	241_Win.2	Solibacillus sp.
GCA_040273735.1	JBELZM000000000	SAMN41804227	240_Sum.1	Solibacillus sp.
GCA_040273805.1	JBELZO000000000	SAMN41804225	238_Win.8	Solibacillus sp.
GCA_040273755.1	JBELZG000000000	SAMN41804233	240_Sum.5	Sporosarcina sp.
GCA_040274745.1	JBEMAH000000000	SAMN41804205	234_Win.4	Stenotrophomonas maltophilia
GCA_040274465.1	JBEMBB000000000	SAMN41804185	233_Sum.1	Stenotrophomonas sp.
GCA_040274485.1	JBEMBL000000000	SAMN41804175	231_Sum.4	Stenotrophomonas sp.
GCA_040273855.1	JBELZH000000000	SAMN41804232	240_Sum.4	Stenotrophomonas sp.
GCA_040273395.1	JBELZZ000000000	SAMN41804213	238_Sum.3	Stenotrophomonas sp.
GCA_040272975.1	JBEMAO000000000	SAMN41804198	234_Sum.1	Stenotrophomonas sp.
GCA_040272945.1	JBELYM000000000	SAMN41804253	241_Sum.5	Stenotrophomonas sp.
GCA_040274525.1	JBEMAP000000000	SAMN41804197	233_Win.5	Succiniclasticum sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	78
Data volume, Mbytes	25133

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Bos indicus (zebu cattle)

Bos indicus Genome sequencing

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