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Accession: PRJNA1080313 ID: 1080313

Integrating metagenomic and isolation strategies revealed the first profiles of pathogenesis and resistome on pork surface

Potentially pathogenic bacterial isolates on the surface of pork in HK
AccessionPRJNA1080313
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 26-Feb-2024
City University of Hong Kong
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)84
SRA Experiments10
Other datasets
BioSample94
Assembly84
Assembly details:
Assembly levelNumber of Assemblies
84
84
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_037172825.1ContigJBANPH000000000SAMN40125685
P7-MAC-MRP-2
GCA_037172585.1ContigJBANOX000000000SAMN40125695
P8-MAC-MRP-1
GCA_037172545.1ContigJBANPA000000000SAMN40125692
P7-MAC-CST-1
GCA_037172885.1ContigJBANPJ000000000SAMN40125683
P6-TCBS-CTX-2
GCA_037172505.1ContigJBANOQ000000000SAMN40125702
P8-TCBS-TIG-2
GCA_037172905.1ContigJBANPN000000000SAMN40125679
P6-MAC-MRP-2
GCA_037167675.1ContigJBANNW000000000SAMN40125722
P10-TCBS-TIG-1
GCA_037173065.1ContigJBANPZ000000000SAMN40125667
P6-TCBS-MRP-2
GCA_037173025.1ContigJBANPY000000000SAMN40125668
P7-TCBC-MRP-2
GCA_037172985.1ContigJBANPX000000000SAMN40125669
P10-TCBS-CTX-4
GCA_037167825.1ContigJBANOG000000000SAMN40125712
P9-MAC-CTX-3
GCA_037167805.1ContigJBANOH000000000SAMN40125711
P9-MAC-CTX-2
GCA_037167525.1ContigJBANND000000000SAMN40125741
P12-MAC-MRP-2
GCA_037167505.1ContigJBANNJ000000000SAMN40125735
P11-MAC-CST-1
GCA_037167455.1ContigJBANNF000000000SAMN40125739
P11-MAC-TIG-3
GCA_037167475.1ContigJBANNM000000000SAMN40125732
P11-MAC-CTX-1
GCA_037167925.1ContigJBANOD000000000SAMN40125715
P9-MAC-CST-1
GCA_037167865.1ContigJBANNX000000000SAMN40125721
P10-MAC-CTX-1
GCA_037167765.1ContigJBANNS000000000SAMN40125726
P10-MAC-TIG-1
GCA_037167745.1ContigJBANNR000000000SAMN40125727
P10-MAC-TIG-2
GCA_037167665.1ContigJBANNQ000000000SAMN40125728
P10-MAC-MRP-2
GCA_037167655.1ContigJBANNL000000000SAMN40125733
P11-MAC-CTX-3
GCA_037167425.1ContigJBANNE000000000SAMN40125740
P12-MAC-MRP-1
GCA_037167385.1ContigJBANNI000000000SAMN40125736
P11-MAC-CST-2
GCA_037167355.1ContigJBANNG000000000SAMN40125738
P11-MAC-TIG-2
GCA_037167365.1ContigJBANMZ000000000SAMN40125745
P12-MAC-TIG-3
GCA_037167345.1ContigJBANNC000000000SAMN40125742
P12-MAC-CST-1
GCA_037167265.1ContigJBANMV000000000SAMN40125749
P12-MAC-CTX-3
GCA_037167245.1ContigJBANMU000000000SAMN40125750
P12-MAC-CTX-4
GCA_037167255.1ContigJBANNA000000000SAMN40125744
P12-MAC-TIG-2
GCA_037167215.1ContigJBANMW000000000SAMN40125748
P12-TCBS-CTX-1
GCA_037167205.1ContigJBANNB000000000SAMN40125743
P12-MAC-TIG-1
GCA_037167155.1ContigJBANNT000000000SAMN40125725
P10-MAC-CTX-2
GCA_037167565.1ContigJBANNN000000000SAMN40125731
P10-MAC-MRP-1
GCA_037167555.1ContigJBANNK000000000SAMN40125734
P11-MAC-CTX-4
GCA_037172955.1ContigJBANPU000000000SAMN40125672
P5-MAC-MRP-1
GCA_037172925.1ContigJBANPO000000000SAMN40125678
P6-MAC-MRP-1
GCA_037173005.1ContigJBANPT000000000SAMN40125673
P5-MAC-CTX-2
GCA_037172945.1ContigJBANPP000000000SAMN40125677
P6-MAC-CTX-1
GCA_037173045.1ContigJBANPV000000000SAMN40125671
P5-MAC-TIG-3
GCA_037172865.1ContigJBANPS000000000SAMN40125674
P5-MAC-CST-1
GCA_037172845.1ContigJBANPI000000000SAMN40125684
P7-MAC-MRP-1
GCA_037172725.1ContigJBANPR000000000SAMN40125675
P5-Vibrio-MRP-1
GCA_037172705.1ContigJBANPF000000000SAMN40125687
P7-MAC-CTX-1
GCA_037172805.1ContigJBANPM000000000SAMN40125680
P6-MAC-CST-1
GCA_037172785.1ContigJBANPW000000000SAMN40125670
P5-MAC-TIG-1
GCA_037172365.1ContigJBANOZ000000000SAMN40125693
P7-TCBC-MRP-1
GCA_037172465.1ContigJBANOO000000000SAMN40125704
P9-TCBS-CTX-4
GCA_037172445.1ContigJBANON000000000SAMN40125705
P9-MAC-MRP-1
GCA_037172425.1ContigJBANOT000000000SAMN40125699
P8-MAC-CST-2
GCA_037172405.1ContigJBANOV000000000SAMN40125697
P8-MAC-CTX-3
GCA_037172525.1ContigJBANOW000000000SAMN40125696
P8-MAC-CTX-1
GCA_037172565.1ContigJBANOU000000000SAMN40125698
P8-MAC-CST-1
GCA_037172665.1ContigJBANPE000000000SAMN40125688
P7-MAC-CTX-2
GCA_037172645.1ContigJBANPB000000000SAMN40125691
P7-MAC-TIG-1
GCA_037172625.1ContigJBANPD000000000SAMN40125689
P7-MAC-CTX-3
GCA_037168025.1ContigJBANOL000000000SAMN40125707
P9-MAC-MRP-3
GCA_037168005.1ContigJBANOK000000000SAMN40125708
P9-MAC-TIG-1
GCA_037167965.1ContigJBANOJ000000000SAMN40125709
P9-MAC-TIG-2
GCA_037172285.1ContigJBANPL000000000SAMN40125681
P6-MAC-TIG-3
GCA_037172325.1ContigJBANOM000000000SAMN40125706
P9-MAC-MRP-2
GCA_037172345.1ContigJBANOS000000000SAMN40125700
P8-MAC-TIG-1
GCA_037172685.1ContigJBANPC000000000SAMN40125690
P7-MAC-CTX-4
GCA_037172485.1ContigJBANOP000000000SAMN40125703
P9-TCBS-CTX-1
GCA_037172605.1ContigJBANPK000000000SAMN40125682
P6-TCBS-CTX-1
GCA_037167945.1ContigJBANOE000000000SAMN40125714
P9-TCBS-TIG-2
GCA_037167165.1ContigJBANNH000000000SAMN40125737
P11-MAC-TIG-1
GCA_037167305.1ContigJBANMX000000000SAMN40125747
P12-MAC-CTX-1
GCA_037167885.1ContigJBANNY000000000SAMN40125720
P10-MAC-CST-1
GCA_037167845.1ContigJBANOI000000000SAMN40125710
P9-MAC-TIG-4
GCA_037167445.1ContigJBANNV000000000SAMN40125723
P10-TCBS-TIG-2
GCA_037167285.1ContigJBANMY000000000SAMN40125746
P12-MAC-TIG-4
GCA_037167615.1ContigJBANOB000000000SAMN40125717
P9-TCBS-MRP-4
GCA_037167905.1ContigJBANOC000000000SAMN40125716
P9-TCBS-MRP-3
GCA_037172765.1ContigJBANPQ000000000SAMN40125676
P5-Vibrio-TIG-1
GCA_037167985.1ContigJBANOF000000000SAMN40125713
P9-TCBS-TIG-1
GCA_037172305.1ContigJBANOY000000000SAMN40125694
P7-TCBC-TIG-1
GCA_037167695.1ContigJBANNU000000000SAMN40125724
P10-TCBS-TIG-3
GCA_037167545.1ContigJBANNP000000000SAMN40125729
P10-TCBS-MRP-2
GCA_037167595.1ContigJBANNO000000000SAMN40125730
P10-TCBS-MRP-3
GCA_037172745.1ContigJBANPG000000000SAMN40125686
P7-MAC-MRP-3
GCA_037167645.1ContigJBANOA000000000SAMN40125718
P9-XLT4-TIG-1
GCA_037167785.1ContigJBANNZ000000000SAMN40125719
P9-XLT4-TIG-2
GCA_037172385.1ContigJBANOR000000000SAMN40125701
P8-TCBS-TIG-1
SRA Data Details
ParameterValue
Data volume, Gbases258
Data volume, Tbytes0.15

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