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Genome Information for Lycopodina hypogea
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This project collects the sequencing data and assemblies generated for Lycopodina hypogea, common name LMA microbiome, to facilitate genome assembly and annotation as part of the Aquatic Symbiosis Genomics (ASG) Project (https://www.aquaticsymbiosisgenomics.org/) from samples supplied by the ASG Sponges-as-Symbiont Hub (https://www.aquaticsymbiosisgenomics.org/collaborators/the-genomic-basis-of-sponge-microbe-symbioses/). The data under this project are made available subject to the Tree of Life Open Data Release Policy (https://www.darwintreeoflife.org/project-resources/).
| Accession | PRJEB72483 |
| Type | Umbrella project |
| Organism | Lycopodina hypogea[Taxonomy ID: 2491183] Eukaryota; Metazoa; Porifera; Demospongiae; Heteroscleromorpha; Poecilosclerida; Cladorhizidae; Lycopodina; Lycopodina hypogea |
| Submission | Registration date: 12-Feb-2024
WELLCOME SANGER INSTITUTE |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 18 |
| WGS master | 2 |
| Genomic DNA | 16 |
| SRA Experiments | 3 |
| Other datasets |
| BioSample | 4 |
| Assembly | 2 |
odLycHypo encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds Total |
1
1
2
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJEB72865 | Scaffolds | Lycopodina hypogea | Lycopodina hypogea (LMA microbiome) genome assembly, odLycHypo2, alternate haplotype (WELLCOME SANGER INSTITUTE) | | PRJEB72864 | Chromosomes | Lycopodina hypogea | Lycopodina hypogea (LMA microbiome) genome assembly, odLycHypo2 (WELLCOME SANGER INSTITUTE) |
|
| Other | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJEB72482 | Lycopodina hypogea | Lycopodina hypogea (LMA microbiome), genomic and transcriptomic data (WELLCOME SANGER INSTITUTE) |
|