ID 1055688 - BioProject

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Accession: PRJNA1055688 ID: 1055688

Examining the intersection of human, animal, and environmental interfaces of Carbapenem-resistant Citrobacter: evolution, transmission and resistance

Our study provides comprehensive insights into epidemiology, diversity, and resistance of CRC strians in China. More...

Accession	PRJNA1055688
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 22-Dec-2023 The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	168
Other datasets
BioSample	171
Assembly	168

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

148
20
168

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_035020415.1	JAYGSW000000000	SAMN39063243	M-SY-82	Citrobacter amalonaticus
GCA_035020405.1	JAYGTL000000000	SAMN39063226	M-SY-2	Citrobacter amalonaticus
GCA_035020285.1	JAYGTO000000000	SAMN39063223	M-TZ-71-1	Citrobacter braakii
GCA_035025005.1	JAYGWE000000000	SAMN39063155	C-P348	Citrobacter braakii
GCA_035024945.1	JAYGWC000000000	SAMN39063157	C-P587	Citrobacter braakii
GCA_035024925.1	JAYGVY000000000	SAMN39063161	39	Citrobacter braakii
GCA_035024865.1	JAYGVX000000000	SAMN39063162	42	Citrobacter braakii
GCA_035024845.1	JAYGVV000000000	SAMN39063164	53	Citrobacter braakii
GCA_035024785.1	JAYGVU000000000	SAMN39063165	66	Citrobacter braakii
GCA_035024765.1	JAYGVS000000000	SAMN39063167	89	Citrobacter braakii
GCA_035024725.1	JAYGWB000000000	SAMN39063158	C-P589	Citrobacter braakii
GCA_035024665.1	JAYGVQ000000000	SAMN39063169	97	Citrobacter braakii
GCA_035117395.1	JAYGPJ000000000	SAMN39060147	E318-1	Citrobacter braakii
GCA_035117375.1	JAYGPK000000000	SAMN39060146	L113-1	Citrobacter freundii
GCA_035117355.1	JAYGPC000000000	SAMN39060154	T680-1	Citrobacter freundii
GCA_035117335.1	JAYGPD000000000	SAMN39060153	T430	Citrobacter freundii
GCA_035117315.1	JAYGPB000000000	SAMN39060155	R80	Citrobacter freundii
GCA_035117235.1	JAYGOZ000000000	SAMN39060157	D607-2	Citrobacter freundii
GCA_035117255.1	JAYGOX000000000	SAMN39060159	T603	Citrobacter freundii
GCA_035117245.1	JAYGPI000000000	SAMN39060148	D604-1	Citrobacter freundii
GCA_035117415.1	JAYGPA000000000	SAMN39060156	R888	Citrobacter freundii
GCA_035024625.1	JAYGVT000000000	SAMN39063166	81	Citrobacter freundii
GCA_035024605.1	JAYGVO000000000	SAMN39063171	162	Citrobacter freundii
GCA_035024705.1	JAYGVR000000000	SAMN39063168	92	Citrobacter freundii
GCA_035024545.1	JAYGVK000000000	SAMN39063175	168	Citrobacter freundii
GCA_035024525.1	JAYGVI000000000	SAMN39063177	C-JX-2	Citrobacter freundii
GCA_035024505.1	JAYGVJ000000000	SAMN39063176	177	Citrobacter freundii
GCA_035024485.1	JAYGVH000000000	SAMN39063178	C-JX-28	Citrobacter freundii
GCA_035024465.1	JAYGVE000000000	SAMN39063181	C-SY-38	Citrobacter freundii
GCA_035024425.1	JAYGVG000000000	SAMN39063179	C-SD-20	Citrobacter freundii
GCA_035024405.1	JAYGVL000000000	SAMN39063174	167	Citrobacter freundii
GCA_035024905.1	JAYGWI000000000	SAMN39063151	TZ55-1	Citrobacter freundii
GCA_035024885.1	JAYGVW000000000	SAMN39063163	45	Citrobacter freundii
GCA_035025045.1	JAYGWF000000000	SAMN39063154	C-P312	Citrobacter freundii
GCA_035024965.1	JAYGWG000000000	SAMN39063153	C655-3	Citrobacter freundii
GCA_035024985.1	JAYGWD000000000	SAMN39063156	C-P513	Citrobacter freundii
GCA_035025025.1	JAYGWJ000000000	SAMN39063150	NX53-1	Citrobacter freundii
GCA_035025185.1	JAYGWQ000000000	SAMN39063143	1105-2	Citrobacter freundii
GCA_035025145.1	JAYGWM000000000	SAMN39063147	761	Citrobacter freundii
GCA_035025125.1	JAYGWL000000000	SAMN39063148	FJ91-1	Citrobacter freundii
GCA_035025105.1	JAYGWK000000000	SAMN39063149	FJ92-1	Citrobacter freundii
GCA_035020265.1	JAYGTN000000000	SAMN39063224	M-TZ-81	Citrobacter freundii
GCA_035020045.1	JAYGRX000000000	SAMN39063268	C-SD-72-1	Citrobacter freundii
GCA_035020025.1	JAYGQY000000000	SAMN39063294	M-Q-42	Citrobacter freundii
GCA_035020185.1	JAYGTR000000000	SAMN39063220	M-TZ-53	Citrobacter freundii
GCA_035020165.1	JAYGTI000000000	SAMN39063230	M-SY-15	Citrobacter freundii
GCA_035020145.1	JAYGTG000000000	SAMN39063232	M-SY-24	Citrobacter freundii
GCA_035020125.1	JAYGTH000000000	SAMN39063231	M-SY-21	Citrobacter freundii
GCA_035020105.1	JAYGTQ000000000	SAMN39063221	M-TZ-65	Citrobacter freundii
GCA_035020085.1	JAYGRO000000000	SAMN39063278	C-RB-7	Citrobacter freundii
GCA_035020225.1	JAYGTJ000000000	SAMN39063229	M-SY-10	Citrobacter freundii
GCA_035020005.1	JAYGRK000000000	SAMN39063282	C-RB-74	Citrobacter freundii
GCA_035020685.1	JAYGUG000000000	SAMN39063205	C-YW-16	Citrobacter freundii
GCA_035020665.1	JAYGUF000000000	SAMN39063206	C-YW-17	Citrobacter freundii
GCA_035020345.1	JAYGSV000000000	SAMN39063244	M-SY-84	Citrobacter freundii
GCA_035020325.1	JAYGSU000000000	SAMN39063245	M-SY-87	Citrobacter freundii
GCA_035020745.1	JAYGSZ000000000	SAMN39063240	M-SY-45	Citrobacter freundii
GCA_035020725.1	JAYGSQ000000000	SAMN39063249	M-SY-94	Citrobacter freundii
GCA_035020705.1	JAYGSR000000000	SAMN39063248	M-SY-92	Citrobacter freundii
GCA_035020645.1	JAYGUC000000000	SAMN39063209	M-TZ-4	Citrobacter freundii
GCA_035020595.1	JAYGUB000000000	SAMN39063210	M-TZ-5	Citrobacter freundii
GCA_035020625.1	JAYGTZ000000000	SAMN39063212	M-TZ-8	Citrobacter freundii
GCA_035020585.1	JAYGUA000000000	SAMN39063211	M-TZ-6	Citrobacter freundii
GCA_035020565.1	JAYGTU000000000	SAMN39063217	M-TZ-33	Citrobacter freundii
GCA_035020545.1	JAYGTV000000000	SAMN39063216	M-TZ-32	Citrobacter freundii
GCA_035020525.1	JAYGUE000000000	SAMN39063207	C-YW-18	Citrobacter freundii
GCA_035020505.1	JAYGTT000000000	SAMN39063218	M-TZ-34	Citrobacter freundii
GCA_035020485.1	JAYGTD000000000	SAMN39063235	M-SY-33	Citrobacter freundii
GCA_035020465.1	JAYGTA000000000	SAMN39063239	M-SY-44	Citrobacter freundii
GCA_035020445.1	JAYGTB000000000	SAMN39063238	M-SY-42	Citrobacter freundii
GCA_035020765.1	JAYGSO000000000	SAMN39063251	M-SY-105-1	Citrobacter freundii
GCA_035020865.1	JAYGRU000000000	SAMN39063271	M-LY-96	Citrobacter freundii
GCA_035020845.1	JAYGSC000000000	SAMN39063263	M-SD-72	Citrobacter freundii
GCA_035020805.1	JAYGUH000000000	SAMN39063204	C-YW-15	Citrobacter freundii
GCA_035020785.1	JAYGSP000000000	SAMN39063250	M-SY-97	Citrobacter freundii
GCA_035020965.1	JAYGRN000000000	SAMN39063279	C-RB-31	Citrobacter freundii
GCA_035020945.1	JAYGSD000000000	SAMN39063262	M-SD-48	Citrobacter freundii
GCA_035020925.1	JAYGRV000000000	SAMN39063270	M-LY-14	Citrobacter freundii
GCA_035020905.1	JAYGRR000000000	SAMN39063274	M-RB-25	Citrobacter freundii
GCA_035020885.1	JAYGSK000000000	SAMN39063255	C-SRM-11	Citrobacter freundii
GCA_035021105.1	JAYGSL000000000	SAMN39063254	C-SRM-7	Citrobacter freundii
GCA_035021085.1	JAYGSA000000000	SAMN39063265	C-SD-30	Citrobacter freundii
GCA_035021065.1	JAYGRT000000000	SAMN39063272	M-LY-33	Citrobacter freundii
GCA_035021045.1	JAYGRY000000000	SAMN39063267	C-SD-43-1	Citrobacter freundii
GCA_035021025.1	JAYGSF000000000	SAMN39063260	M-SD-45	Citrobacter freundii
GCA_035021005.1	JAYGRZ000000000	SAMN39063266	C-SD-40	Citrobacter freundii
GCA_035020985.1	JAYGSE000000000	SAMN39063261	M-SD-46	Citrobacter freundii
GCA_035021765.1	JAYGSH000000000	SAMN39063258	M-SD-6	Citrobacter freundii
GCA_035021745.1	JAYGSG000000000	SAMN39063259	M-SD-40	Citrobacter freundii
GCA_035021725.1	JAYGSS000000000	SAMN39063247	M-SY-91	Citrobacter freundii
GCA_035021705.1	JAYGRG000000000	SAMN39063286	C-JX-3	Citrobacter freundii
GCA_035021685.1	JAYGSB000000000	SAMN39063264	M-SD-73	Citrobacter freundii
GCA_035021665.1	JAYGRH000000000	SAMN39063285	M-JX-74	Citrobacter freundii
GCA_035021645.1	JAYGRP000000000	SAMN39063276	M-RB-35-1	Citrobacter freundii
GCA_035021625.1	JAYGRM000000000	SAMN39063280	C-RB-33	Citrobacter freundii
GCA_035021605.1	JAYGRS000000000	SAMN39063273	M-LY-36	Citrobacter freundii
GCA_035021585.1	JAYGRF000000000	SAMN39063287	C-JX-8	Citrobacter freundii
GCA_035021565.1	JAYGRQ000000000	SAMN39063275	M-RB-28	Citrobacter freundii
GCA_035021545.1	JAYGRL000000000	SAMN39063281	C-RB-57-1	Citrobacter freundii
GCA_035021525.1	JAYGRI000000000	SAMN39063284	M-JX-40	Citrobacter freundii
GCA_035021505.1	JAYGST000000000	SAMN39063246	M-SY-89	Citrobacter freundii
GCA_035021485.1	JAYGRW000000000	SAMN39063269	C-SD-73-1	Citrobacter freundii
GCA_035021465.1	JAYGSN000000000	SAMN39063252	M-SY-105-2	Citrobacter freundii
GCA_035021425.1	JAYGSJ000000000	SAMN39063256	C-SRM-22	Citrobacter freundii
GCA_035021405.1	JAYGSI000000000	SAMN39063257	C-SRM-21	Citrobacter freundii
GCA_035021385.1	JAYGSX000000000	SAMN39063242	M-SY-76-1	Citrobacter freundii
GCA_035021355.1	JAYGSY000000000	SAMN39063241	M-SY-49	Citrobacter freundii
GCA_035021345.1	JAYGRA000000000	SAMN39063292	C-Q44	Citrobacter freundii
GCA_035021325.1	JAYGRE000000000	SAMN39063288	C-JX-14	Citrobacter freundii
GCA_035021305.1	JAYGQZ000000000	SAMN39063293	C-Q45-2	Citrobacter freundii
GCA_035021285.1	JAYGTX000000000	SAMN39063214	M-TZ-19	Citrobacter freundii
GCA_035021265.1	JAYGRD000000000	SAMN39063289	C-JX-29	Citrobacter freundii
GCA_035021245.1	JAYGTF000000000	SAMN39063233	M-SY-28	Citrobacter freundii
GCA_035021225.1	JAYGTK000000000	SAMN39063227	M-SY-7	Citrobacter freundii
GCA_035021205.1	JAYGTE000000000	SAMN39063234	M-SY-32	Citrobacter freundii
GCA_035021185.1	JAYGTC000000000	SAMN39063237	M-SY-35	Citrobacter freundii
GCA_035021165.1	JAYGRJ000000000	SAMN39063283	M-JX-5	Citrobacter freundii
GCA_035021145.1	JAYGRC000000000	SAMN39063290	126-1	Citrobacter freundii
GCA_035021125.1	JAYGRB000000000	SAMN39063291	C-Q39	Citrobacter freundii
GCA_035022905.1	JAYGUM000000000	SAMN39063199	C-YW-10	Citrobacter freundii
GCA_035024685.1	JAYGVP000000000	SAMN39063170	150	Citrobacter freundii
GCA_035023005.1	JAYGUT000000000	SAMN39063192	C-YW-3	Citrobacter freundii
GCA_035022985.1	JAYGUR000000000	SAMN39063194	C-YW-5	Citrobacter freundii
GCA_035022965.1	JAYGUY000000000	SAMN39063187	M-ZR-66	Citrobacter freundii
GCA_035022945.1	JAYGUL000000000	SAMN39063200	C-YW-11	Citrobacter freundii
GCA_035024105.1	JAYGVB000000000	SAMN39063184	M-ZR-31	Citrobacter freundii
GCA_035024085.1	JAYGUN000000000	SAMN39063198	C-YW-9	Citrobacter freundii
GCA_035024065.1	JAYGUJ000000000	SAMN39063202	C-YW-13	Citrobacter freundii
GCA_035024045.1	JAYGUI000000000	SAMN39063203	C-YW-14	Citrobacter freundii
GCA_035024365.1	JAYGUX000000000	SAMN39063188	M-ZR-67	Citrobacter freundii
GCA_035024305.1	JAYGUU000000000	SAMN39063191	C-YW-2	Citrobacter freundii
GCA_035024285.1	JAYGUZ000000000	SAMN39063186	M-ZR-54	Citrobacter freundii
GCA_035024265.1	JAYGUV000000000	SAMN39063190	C-ZR-81	Citrobacter freundii
GCA_035024245.1	JAYGUK000000000	SAMN39063201	C-YW-12	Citrobacter freundii
GCA_035024205.1	JAYGUQ000000000	SAMN39063195	C-YW-6	Citrobacter freundii
GCA_035024185.1	JAYGUP000000000	SAMN39063196	C-YW-7	Citrobacter freundii
GCA_035024165.1	JAYGVA000000000	SAMN39063185	M-ZR-42	Citrobacter freundii
GCA_035024145.1	JAYGUO000000000	SAMN39063197	C-YW-8	Citrobacter freundii
GCA_035024125.1	JAYGUS000000000	SAMN39063193	C-YW-4	Citrobacter freundii
GCA_035058345.1	JAYGUD000000000	SAMN39063208	M-TZ-1	Citrobacter freundii
GCA_035117295.1	JAYGOY000000000	SAMN39060158	F821-1	Citrobacter koseri
GCA_035117475.1	JAYGPG000000000	SAMN39060150	E806-2	Citrobacter koseri
GCA_035117455.1	JAYGPF000000000	SAMN39060151	G410-1	Citrobacter koseri
GCA_035117435.1	JAYGPE000000000	SAMN39060152	T310	Citrobacter koseri
GCA_035117535.1	JAYGPM000000000	SAMN39060144	P614	Citrobacter portucalensis
GCA_035117515.1	JAYGPL000000000	SAMN39060145	R204-2-2	Citrobacter portucalensis
GCA_035117495.1	JAYGPH000000000	SAMN39060149	E222	Citrobacter portucalensis
GCA_035024345.1	JAYGUW000000000	SAMN39063189	C-ZR-74-1	Citrobacter portucalensis
GCA_035024325.1	JAYGVM000000000	SAMN39063173	165	Citrobacter portucalensis
GCA_035021445.1	JAYGSM000000000	SAMN39063253	C-SRM-5	Citrobacter portucalensis
GCA_035020305.1	JAYGTP000000000	SAMN39063222	M-TZ-70	Citrobacter portucalensis
GCA_035020385.1	JAYGTW000000000	SAMN39063215	M-TZ-31	Citrobacter portucalensis
GCA_035020365.1	JAYGTY000000000	SAMN39063213	M-TZ-12	Citrobacter portucalensis
GCA_035020205.1	JAYGTS000000000	SAMN39063219	M-TZ-44	Citrobacter portucalensis
GCA_035019965.1	JAYGQW000000000	SAMN39063296	W261	Citrobacter portucalensis
GCA_035019945.1	JAYGQV000000000	SAMN39063297	W313	Citrobacter portucalensis
GCA_035020065.1	JAYGQX000000000	SAMN39063295	W237	Citrobacter portucalensis
GCA_035020245.1	JAYGTM000000000	SAMN39063225	M-TZ-86	Citrobacter portucalensis
GCA_035025085.1	JAYGWO000000000	SAMN39063145	1456	Citrobacter portucalensis
GCA_035025065.1	JAYGWP000000000	SAMN39063144	142-1	Citrobacter portucalensis
GCA_035024385.1	JAYGVC000000000	SAMN39063183	C-TZ-9	Citrobacter portucalensis
GCA_035024445.1	JAYGVD000000000	SAMN39063182	C-TZ-17	Citrobacter portucalensis
GCA_035024805.1	JAYGWH000000000	SAMN39063152	C38-1	Citrobacter portucalensis
GCA_035024565.1	JAYGVN000000000	SAMN39063172	164	Citrobacter portucalensis
GCA_035024645.1	JAYGWA000000000	SAMN39063159	M160	Citrobacter portucalensis
GCA_035024825.1	JAYGVZ000000000	SAMN39063160	20	Citrobacter sedlakii
GCA_035024745.1	JAYGWN000000000	SAMN39063146	1724-3	Citrobacter youngae
GCA_035024225.1	JAYGVF000000000	SAMN39063180	C-SD-31	Citrobacter youngae

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Examining the intersection of human, animal, and environmental interfaces of Carbapenem-resistant Citrobacter: evolution, transmission and resistance

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