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ASM27648v1

Organism name:
Staphylococcus epidermidis NIHLM070 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: NIHLM070
BioSample:
SAMN00991854
BioProject:
PRJNA62351
Submitter:
NISC - NIH Intramural Sequencing Center
Date:
2012/07/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • many frameshifted proteins
GenBank assembly accession:
GCA_000276485.1 (latest)
RefSeq assembly accession:
GCF_000276485.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AKGL01
Assembly method:
Newbler v. 2.3
Genome coverage:
45x
Sequencing technology:
454 GS FLX

IDs: 484728 [UID] 396958 [GenBank] 484728 [RefSeq]

See Genome Information for Staphylococcus epidermidis

There are 4842 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source bacteria available from BEI Resources.
Initial annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.
A ... second round of automated annotation was performed by the HMP DACC using the JCVI's autoannotate pipeline to ensure protein naming consistency across the HMP genomes.  more

Global statistics

Total sequence length2,471,193
Total ungapped length2,471,193
Number of contigs66
Contig N50108,860
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)66

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,471,193662,471,193108,86000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus epidermidis NIHLM070Staphylococcus epidermidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006094375.1Staphylococcus epidermidistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006094375.1Staphylococcus epidermidistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.6395.0494.29
Best-match type99.6395.0494.29

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna