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VspAS16v1.0

Organism name:
Veillonella sp. AS16 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AS16
BioSample:
SAMN02597445
BioProject:
PRJNA165949
Submitter:
JCVI
Date:
2014/01/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000517785.1 (latest)
RefSeq assembly accession:
GCF_000517785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZYX01
Assembly method:
Newbler v. 2.6
Expected final version:
yes
Genome coverage:
85x
Sequencing technology:
Illumina

IDs: 91571 [UID] 890798 [GenBank] 1448888 [RefSeq]

See Genome Information for Veillonella sp. AS16

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.

Global statistics

Total sequence length1,946,140
Total ungapped length1,946,140
Number of contigs22
Contig N50311,729
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)22

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,946,140221,946,140311,72900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Veillonella sp. AS16Veillonella sp. AS16

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002959855.1Veillonella denticariositype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.1593.9792.27

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna