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SspACS2v1.0

Organism name:
Streptococcus sp. ACS2 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ACS2
BioSample:
SAMN02641577
BioProject:
PRJNA165941
Submitter:
JCVI
Date:
2014/01/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000525585.1 (latest)
RefSeq assembly accession:
GCF_000525585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JALT01
Assembly method:
Newbler v. 2.6
Expected final version:
yes
Genome coverage:
86x
Sequencing technology:
Illumina

IDs: 95601 [UID] 899268 [GenBank] 1447268 [RefSeq]

See Genome Information for Streptococcus sp. ACS2

Pathogen Detection Resources

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.

Global statistics

Total sequence length2,128,555
Total ungapped length2,128,555
Number of contigs48
Contig N50140,174
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)48

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,128,555482,128,555140,17400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus sp. ACS2Streptococcus sp. ACS2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900143035.1Streptococcus salivariustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.1187.6286.53

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna